DESCRIPTION

Package: regioneR
Type: Package
Title: Association analysis of genomic regions based on permutation tests
Version: 1.33.0
Date: 2018-08-14
Author: Anna Diez-Villanueva <adiez@iconcologia.net>, Roberto Malinverni
    <roberto.malinverni@gmail.com> and Bernat Gel <bgel@igtp.cat>
Maintainer: Bernat Gel <bgel@imppc.org>
Description: regioneR offers a statistical framework based on
    customizable permutation tests to assess the association
    between genomic region sets and other genomic features.
License: Artistic-2.0
Depends:
    GenomicRanges
Imports:
    memoise,
    GenomicRanges,
    IRanges,
    BSgenome,
    Biostrings,
    rtracklayer,
    parallel,
    graphics,
    stats,
    utils,
    methods,
    GenomeInfoDb,
    S4Vectors,
    tools
Suggests:
    BiocStyle,
    knitr,
    rmarkdown,
    BSgenome.Hsapiens.UCSC.hg19.masked,
    testthat
VignetteBuilder: knitr
Encoding: UTF-8
biocViews: Genetics, ChIPSeq, DNASeq, MethylSeq, CopyNumberVariation
NeedsCompilation: no
RoxygenNote: 7.2.1