diff --git a/Dockerfile b/Dockerfile index 051caae..459ec7b 100644 --- a/Dockerfile +++ b/Dockerfile @@ -46,11 +46,9 @@ RUN conda config --add channels r && conda install --yes --quiet biopython rpy2 pip install --no-cache-dir bioblend galaxy-ie-helpers # Now for a python2 environment -RUN conda install --quiet --yes -p $CONDA_DIR/envs/python2 ipykernel biopython rpy2 \ +RUN /bin/bash -c "source activate python2 && conda install --quiet --yes biopython rpy2 \ cython patsy statsmodels cloudpickle dill tensorflow=1.0* && conda clean -yt && \ - pip install --no-cache-dir bioblend galaxy-ie-helpers && \ - $CONDA_DIR/envs/python2/bin/python \ - $CONDA_DIR/envs/python2/bin/ipython kernel install --user + pip install --no-cache-dir bioblend galaxy-ie-helpers" # IRuby RUN iruby register