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bibbox.json
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[
{
"group_name": "v4 Testapps",
"group_members": [
]
},
{
"group_name": "Biobank & Bioinformatics Applications",
"group_members": [
{
"app_name": "app-openspecimen",
"app_display_name": "OpenSpecimen",
"short_description": "Highly Configurable Biospecimen Management System",
"installable": true,
"decoration": "",
"tags": [
"Sample Management",
"Biobanking"
],
"versions": [
{
"app_version": "v9.0.RC2",
"version": "v9.0.RC2",
"tooltip": "Openspecimen Bibbox Development version"
},
{
"app_version": "v10.1.RC1",
"version": "v10.1.RC1",
"tooltip": "Openspecimen Bibbox Development version"
}
]
},
{
"app_name": "app-redcap",
"app_display_name": "RedCap",
"short_description": "Survey Management System",
"installable": true,
"decoration": "",
"tags": [
"Survey"
],
"versions": [
{
"app_version": "redcap_for_bibbox",
"version": "Redcap for BIBBOX",
"tooltip": ""
}
]
},
{
"app_name": "app-limesurvey",
"app_display_name": "LimeSurvey",
"short_description": "Statistical survey web app",
"installable": true,
"decoration": "new",
"tags": [
"Survey"
],
"versions": [
{
"app_version": "v5.6.0",
"version": "v5.6.0-bibboxrel001_tag",
"tooltip": "LimeSurvey v5.6.0 for BBv4"
},
{
"app_version": "v5.0.10",
"version": "v5.0.10-bibboxrel001_tag",
"tooltip": "LimeSurvey v5.0.10 for BBv4"
}
]
},
{
"app_name": "app-phenotips",
"app_display_name": "PhenoTips",
"short_description": "Phenotype Editor for the HPO ontology",
"installable": true,
"decoration": "",
"tags": [
"Phenotyping",
"Genetic Disorders"
],
"versions": [
{
"app_version": "v1.4.9",
"version": "v1.4.9",
"tooltip": "stable version for BIBBOXv4"
}
]
},
{
"app_name": "app-galaxy",
"app_display_name": "Galaxy",
"short_description": "platform for FAIR data analysis",
"installable": true,
"decoration": "",
"tags": [
"Data Analysis"
],
"versions": [
{
"app_version": "v23.0",
"version": "v23.0",
"tooltip": ""
},
{
"app_version": "v23.0-anvil",
"version": "v23.0",
"tooltip": ""
}
]
},
{
"app_name": "app-varapp",
"app_display_name": "Varapp",
"short_description": "Varapp: filter genetic variants",
"installable": true,
"decoration": "new",
"tags": [
"Bioinformatics",
"Variant filtering"
],
"versions": [
{
"app_version": "v2.0.3",
"version": "version 2.0.3",
"tooltip": ""
}
]
},
{
"app_name": "app-rstudio-server-open-source-edition",
"app_display_name": "RStudio Server",
"short_description": "IDE for open source data science",
"installable": true,
"decoration": "new",
"tags": [
"Data Analysis"
],
"versions": [
{
"app_version": "v4.3",
"version": "version 4.3",
"tooltip": ""
}
]
},
{
"app_name": "app-open-cravat",
"app_display_name": "Open Cravat",
"short_description": "Open Cravat a web-tool for varaiant annotaions",
"installable": true,
"decoration": "new",
"tags": [
"Data Analysis",
"Genomic",
"Bioinformatics",
"Variants"
],
"versions": [
{
"app_version": "v2.2.7",
"version": "version 2.2.7",
"tooltip": ""
}
]
},
{
"app_name": "app-cBioPortal",
"app_display_name": "cBioPortal",
"short_description": "The cBioPortal for Cancer Genomics is a resource for interactive exploration of multidimensional cancer genomics data sets.",
"installable": true,
"decoration": "new",
"tags": [
"Data Analysis",
"Genomic",
"Bioinformatics"
],
"versions": [
{
"app_version": "v5.3.8",
"version": "version 5.3.8",
"tooltip": ""
}
]
},
{
"app_name": "app-omero",
"app_display_name": "Omero",
"short_description": "Digital Microscopy",
"installable": true,
"decoration": "",
"tags": [
"Imaging",
"Digital Pathology"
],
"versions": [
{
"app_version": "v5.6",
"version": "v5.6",
"tooltip": "Omero Server and Web v5.6.x"
}
]
},
{
"app_name": "app-molgenis",
"app_display_name": "Molgenis",
"short_description": "EXCEL in the Web",
"installable": true,
"decoration": "",
"tags": [
"Data Integration"
],
"versions": [
{
"app_version": "v10.1.0",
"version": "v10.1.0",
"tooltip": ""
},
{
"app_version": "v8.7.2_bibboxrel001",
"version": "v8.7.2_bibboxrel001_tag",
"tooltip": ""
}
]
},
{
"app_name": "app-molgenis-emx2",
"app_display_name": "Molgenis-emx2",
"short_description": "EXCEL in the Web",
"installable": true,
"decoration": "",
"tags": [
"Data Integration",
"Data Warehouse",
"Data catalogue"
],
"versions": [
{
"app_version": "v11.15.9",
"version": "v11.15.9",
"tooltip": ""
},
{
"app_version": "v8.203.0",
"version": "v8.203.0",
"tooltip": ""
}
]
},
{
"app_name": "app-hapi-fhir",
"app_display_name": "HAPI-FHIR",
"short_description": "HAPI FHIR is a complete implementation of the HL7 FHIR",
"installable": true,
"decoration": "new",
"tags": [
"Data Collection",
"Data Management"
],
"versions": [
{
"app_version": "v6.6.0",
"version": "v6.6.0",
"tooltip": ""
},
{
"app_version": "v5.6.x",
"version": "v5.6.0",
"tooltip": ""
}
]
}
]
},
{
"group_name": "Helper Applications",
"group_members": [
{
"app_name": "app-taiga",
"app_display_name": "TAIGA",
"short_description": "Project management tool for multi-functional agile teams",
"installable": true,
"decoration": "",
"tags": [
"Project Management",
"Tool"
],
"versions": [
{
"app_version": "v6.7.0",
"version": "v6.7.0",
"tooltip": ""
},
{
"app_version": "dev-v6.7.0",
"version": "dev-v6.7.0_branch",
"tooltip": ""
}
]
},
{
"app_name": "app-mantis",
"app_display_name": "Mantis",
"short_description": "Mantis Bugtracker",
"installable": true,
"decoration": "",
"tags": [
"Bugtracker",
"Administration"
],
"versions": [
{
"app_version": "v2.25.0",
"version": "v2.25.0",
"tooltip": ""
}
]
},
{
"app_name": "app-mattermost",
"app_display_name": "Mattermost",
"short_description": "Secure collaboration for technical teams",
"installable": true,
"decoration": "",
"tags": [
"Social",
"Collaboration",
"Team messaging",
"Audio & Screen Sharing"
],
"versions": [
{
"app_version": "v8.0.2",
"version": "v8.0.2",
"tooltip": "Not for production"
},
{
"app_version": "v7.7",
"version": "v7.7",
"tooltip": "Not for production"
}
]
},
{
"app_name": "app-elabftw",
"app_display_name": "elabftw",
"short_description": "Electronic Lab Notebook",
"installable": true,
"decoration": "new",
"tags": [
"Documentation",
"Experiment tracker"
],
"versions": [
{
"app_version": "v4.7.0",
"version": "v4.7.0",
"tooltip": "Stable ElabFTW version for bibbox."
},
{
"app_version": "v4.2.4",
"version": "v4.2.4",
"tooltip": "Stable ElabFTW version for bibbox."
}
]
},
{
"app_name": "app-seeddms",
"app_display_name": "SeedDMS",
"short_description": "Self-hosted file storage",
"installable": true,
"decoration": "",
"tags": [
"Files",
"Storage"
],
"versions": [
{
"app_version": "v6.0.19",
"version": "v6.0.19",
"tooltip": "SeedDMS v6.0.19, BBv4.0 test"
},
{
"app_version": "v6.0.11",
"version": "6.0.11-biboxxrel001_tag",
"tooltip": "SeedDMS v6.0.15, BBv4.0"
}
]
},
{
"app_name": "app-labelstudio",
"app_display_name": "Label Studio",
"short_description": "Data annotation tool",
"installable": true,
"decoration": "",
"tags": [
"Data annotation"
],
"versions": [
{
"app_version": "v1.9.0",
"version": "v1.9.0",
"tooltip": ""
}
]
},
{
"app_name": "app-jenkins",
"app_display_name": "Jenkins",
"short_description": "Automatization app",
"installable": true,
"decoration": "",
"tags": [
"automate"
],
"versions": [
{
"app_version": "v2.411",
"version": "v2.411",
"tooltip": "version 2.411"
}
]
},
{
"app_name": "app-wordpress",
"app_display_name": "Wordpress",
"short_description": "Blog, Simple Webportal",
"installable": true,
"decoration": "new",
"tags": [
"Blog",
"CMS"
],
"versions": [
{
"app_version": "v8.2",
"version": "v8.2",
"tooltip": "Developement Bibbox version 8.2 of Wordpress"
},
{
"app_version": "vphp7.4",
"version": "vphp7.4",
"tooltip": "Developement Bibbox version of Wordpress"
}
]
},
{
"app_name": "app-shiny-server",
"app_display_name": "Shiny Server",
"short_description": "Easily build rich and productive interactive web apps in R — no HTML/CSS/JavaScript required.",
"installable": true,
"decoration": "new",
"tags": [
"Data Visualization"
],
"versions": [
{
"app_version": "v4.3.1",
"version": "version 4.3.1",
"tooltip": ""
}
]
},
{
"app_name": "app-jupyter",
"app_display_name": "Jupyter Notebook",
"short_description": "Interactive data science and scientific computing",
"installable": true,
"decoration": "new",
"tags": [
"Data Integration",
"Data Analysis"
],
"versions": [
{
"app_version": "v6.5.4",
"version": "v6.5.4",
"tooltip": "Latest Jupyter Datascience Image from official repo."
},
{
"app_version": "v6.4.5",
"version": "v6.4.5",
"tooltip": "Latest Jupyter Datascience Image from official repo."
}
]
},
{
"app_name": "app-nocodb",
"app_display_name": "NocoDB",
"short_description": "NocoDB is an open source #NoCode platform that turns any database into a smart spreadsheet",
"installable": true,
"decoration": "",
"tags": [
"Project Management",
"Tool"
],
"versions": [
{
"app_version": "v0.109.3",
"version": "v0.109.3",
"tooltip": ""
}
]
},
{
"app_name": "app-moodle",
"app_display_name": "Moodle",
"short_description": "Learning Management System",
"installable": true,
"decoration": "new",
"tags": [
"Learning",
"Teaching",
"LMS"
],
"versions": [
{
"app_version": "v4.0.9",
"version": "v4.0.9",
"tooltip": ""
},
{
"app_version": "v3.11.x",
"version": "version 3.11.6",
"tooltip": ""
}
]
},
{
"app_name": "app-postgres",
"app_display_name": "PostgreSQL",
"short_description": "Object-relational database management system (ORDBMS)",
"installable": true,
"decoration": "new",
"tags": [
"Database"
],
"versions": [
{
"app_version": "v16.0",
"version": "version 16.0",
"tooltip": ""
}
]
},
{
"app_name": "app-solitaire",
"app_display_name": "Solitaire",
"short_description": "Solitaire card game",
"installable": true,
"decoration": "new",
"tags": [
"Solitaire",
"Card game"
],
"versions": [
{
"app_version": "v1.0",
"version": "v1.0",
"tooltip": ""
}
]
}
]
},
{
"group_name": "FAIRified Apps",
"group_members": [
{
"app_name": "app-phenotips-fair",
"app_display_name": "PhenoTips-FAIR",
"short_description": "Phenotype Editor for the HPO ontology",
"installable": true,
"decoration": "FAIR",
"tags": [
"Phenotyping",
"Genetic Disorders"
],
"versions": [
{
"app_version": "v1.4.9",
"version": "v1.4.9",
"tooltip": "V 1.4.9 with FDP extension"
}
]
},
{
"app_name": "app-openspecimen-fair",
"app_display_name": "OpenSpecimenFAIR",
"short_description": "Sample Management",
"installable": true,
"decoration": "FAIR",
"tags": [
"Sample Management"
],
"versions": [
{
"app_version": "v9-0-RC2",
"version": "v9-0-RC2",
"tooltip": "Openspecimen Bibbox Development version"
}
]
},
{
"app_name": "app-molgenis-fair",
"app_display_name": "Molgenis-FAIR",
"short_description": "EXCEL in the Web with FAIR Data Point",
"installable": true,
"decoration": "FAIR",
"tags": [
"Data Integration",
"FAIR Data Point"
],
"versions": [
{
"app_version": "v8.7.2",
"version": "v8.7.2",
"tooltip": ""
},
{
"app_version": "v8.7.x",
"version": "dev_v8.7.x",
"tooltip": ""
}
]
}
]
}
]