From 943d3700a9dd2690dd497103270050a9f19a6e67 Mon Sep 17 00:00:00 2001 From: Jon Ison Date: Thu, 14 May 2020 14:23:38 +0100 Subject: [PATCH] addresses https://github.com/bio-tools/biotoolsSchema/issues/189 --- api_usage_guide.rst | 51 +++++++++++++++++++++++++++++++ community_specific_guidelines.rst | 2 +- curators_guide.rst | 23 +++++++++++++- 3 files changed, 74 insertions(+), 2 deletions(-) diff --git a/api_usage_guide.rst b/api_usage_guide.rst index cc71951..8e71ea8 100644 --- a/api_usage_guide.rst +++ b/api_usage_guide.rst @@ -1530,6 +1530,57 @@ Allowed values (see `Curators Guide `_. + + + +ELIXIR community +---------------- +*ELIXIR (or other) community to which the software is relevant.* + +Attribute name + elixirCommunity + +Required + No + +Cardinality + 0 to many + +Type + ENUM (list) + +Allowed values (see `Curators Guide `_) + + - ``3D-BioInfo`` + - ``Federated Human Data`` + - ``Galaxy`` + - ``Human Copy Number Variation`` + - ``Intrinsically Disordered Proteins`` + - ``Marine Metagenomics`` + - ``Metabolomics`` + - ``Microbial Biotechnology`` + - ``Plant Sciences`` + - ``Proteomics`` + - ``Rare Diseases`` + +**Example** + +.. code-block:: js + + # XML + Galaxy + Metabolomics + + # JSON + "elixirCommunity": + [ + "Galaxy", + "Metabolomics" + ] + +.. note:: + - see the `curation guidelines `_. + Link diff --git a/community_specific_guidelines.rst b/community_specific_guidelines.rst index c5c5261..3bb9b41 100644 --- a/community_specific_guidelines.rst +++ b/community_specific_guidelines.rst @@ -328,7 +328,7 @@ In the *Labels* tab you specify miscellaneous scientific, technical and administ You can use **Collection** to assign tools which are somehow related to one or more groups. These collections can have any names you like. Other ways to group tools are by creating a *bio.tools* subdomain (from *Menu...Manage subdomains*) and by defining `relations `_ between tools. .. note:: - **ELIXIRNode** and **ELIXIRPlatform** define the name of an ELIXIR node or ELIXIR platform, respectively, that is credited for the tool. All tools in the IFB catalogue will have the ELIXIRNode credit set to "France". These are not normally be set by *bio.tools* users {`learn more `_}. + **ELIXIRNode** and **ELIXIRPlatform** define the name of an ELIXIR node or ELIXIR platform, respectively, that is credited for the tool. All tools in the IFB catalogue will have the ELIXIRNode credit set to "France". These are not normally be set by *bio.tools* users {`learn more `_}. **ELXIRCommunity** defines a community (ELIXIR or otherwise) to which the resource is directly relevant - you can select as many as you wish. Tool type diff --git a/curators_guide.rst b/curators_guide.rst index ca9e473..011990c 100644 --- a/curators_guide.rst +++ b/curators_guide.rst @@ -666,7 +666,28 @@ ELIXIR Node "UK" - +ELIXIR Community +................ +*Name of relevant ELIXIR (or other) community, e.g. "Galaxy"* + +- **1.** **MAY** cite any ELIXIR Community to which the software is directly relevant. + +.. csv-table:: + :header: "ELIXIR Node" + :widths: 25 + + "3D-BioInfo" + "Federated Human Data" + "Galaxy" + "Human Copy Number Variation" + "Intrinsically Disordered Proteins" + "Marine Metagenomics" + "Metabolomics" + "Microbial Biotechnology" + "Plant Sciences" + "Proteomics" + "Rare Diseases" + Link group ^^^^^^^^^^^