diff --git a/recipe/meta.yaml b/recipe/meta.yaml deleted file mode 100644 index 87b8145..0000000 --- a/recipe/meta.yaml +++ /dev/null @@ -1,60 +0,0 @@ -{% set version = "1.36.0" %} -{% set name = "groHMM" %} -{% set bioc = "3.18" %} - -package: - name: 'bioconductor-{{ name|lower }}' - version: '{{ version }}' -source: - url: - - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz' - - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 0b1077948ddc9895c57188ca2560bc10 -build: - number: 1 - rpaths: - - lib/R/lib/ - - lib/ - run_exports: '{{ pin_subpackage("bioconductor-grohmm", max_pin="x.x") }}' -# Suggests: BiocStyle, GenomicFeatures, edgeR, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg19.knownGene -requirements: - host: - - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0' - - 'bioconductor-genomicalignments >=1.38.0,<1.39.0' - - 'bioconductor-genomicranges >=1.54.0,<1.55.0' - - 'bioconductor-iranges >=2.36.0,<2.37.0' - - 'bioconductor-rtracklayer >=1.62.0,<1.63.0' - - 'bioconductor-s4vectors >=0.40.0,<0.41.0' - - r-base - - r-mass - - libblas - - liblapack - run: - - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0' - - 'bioconductor-genomicalignments >=1.38.0,<1.39.0' - - 'bioconductor-genomicranges >=1.54.0,<1.55.0' - - 'bioconductor-iranges >=2.36.0,<2.37.0' - - 'bioconductor-rtracklayer >=1.62.0,<1.63.0' - - 'bioconductor-s4vectors >=0.40.0,<0.41.0' - - r-base - - r-mass - build: - - {{ compiler('c') }} - - make -test: - commands: - - '$R -e "library(''{{ name }}'')"' -about: - home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html' - license: GPL-3.0-only - summary: 'GRO-seq Analysis Pipeline' - description: 'A pipeline for the analysis of GRO-seq data.' - license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3' - -extra: - additional-platforms: - - linux-aarch64 - identifiers: - - biotools:{{ name|lower }} diff --git a/recipe/recipe.yaml b/recipe/recipe.yaml new file mode 100644 index 0000000..87ed1d4 --- /dev/null +++ b/recipe/recipe.yaml @@ -0,0 +1,71 @@ +# yaml-language-server: $schema=https://raw.githubusercontent.com/prefix-dev/recipe-format/main/schema.json +# Suggests: BiocStyle, GenomicFeatures, edgeR, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg19.knownGene +schema_version: 1 + +context: + version: 1.36.0 + name: groHMM + bioc: 3.18 + +package: + name: bioconductor-${{ name|lower }} + version: ${{ version }} + +source: + url: + - https://bioconductor.org/packages/${{ bioc }}/bioc/src/contrib/${{ name }}_${{ version }}.tar.gz + - https://bioconductor.org/packages/${{ bioc }}/bioc/src/contrib/Archive/${{ name }}/${{ name }}_${{ version }}.tar.gz + - https://bioarchive.galaxyproject.org/${{ name }}_${{ version }}.tar.gz + - https://depot.galaxyproject.org/software/bioconductor-${{ name|lower }}/bioconductor-${{ name|lower }}_${{ version }}_src_all.tar.gz + md5: 0b1077948ddc9895c57188ca2560bc10 + +build: + number: 1 + dynamic_linking: + rpaths: + - lib/R/lib/ + - lib/ + +requirements: + host: + - bioconductor-genomeinfodb >=1.38.0,<1.39.0 + - bioconductor-genomicalignments >=1.38.0,<1.39.0 + - bioconductor-genomicranges >=1.54.0,<1.55.0 + - bioconductor-iranges >=2.36.0,<2.37.0 + - bioconductor-rtracklayer >=1.62.0,<1.63.0 + - bioconductor-s4vectors >=0.40.0,<0.41.0 + - r-base + - r-mass + - libblas + - liblapack + run: + - bioconductor-genomeinfodb >=1.38.0,<1.39.0 + - bioconductor-genomicalignments >=1.38.0,<1.39.0 + - bioconductor-genomicranges >=1.54.0,<1.55.0 + - bioconductor-iranges >=2.36.0,<2.37.0 + - bioconductor-rtracklayer >=1.62.0,<1.63.0 + - bioconductor-s4vectors >=0.40.0,<0.41.0 + - r-base + - r-mass + build: + - ${{ compiler('c') }} + - make + run_exports: ${{ pin_subpackage("bioconductor-grohmm", upper_bound="x.x") }} + +tests: + - script: + - $R -e "library('${{ name }}')" + +about: + license: GPL-3.0-only + summary: GRO-seq Analysis Pipeline + description: A pipeline for the analysis of GRO-seq data. + # FIXME license_file: ${{ env.get("PREFIX") }}/lib/R/share/licenses/GPL-3 + homepage: https://bioconductor.org/packages/${{ bioc }}/bioc/html/${{ name }}.html + +extra: + additional-platforms: + - linux-aarch64 + identifiers: + - biotools:${{ name|lower }} +