diff --git a/.github/workflows/fair-software.yml b/.github/workflows/fair-software.yml new file mode 100644 index 0000000..238dadf --- /dev/null +++ b/.github/workflows/fair-software.yml @@ -0,0 +1,18 @@ +name: fair-software + +on: + push: + branches: + - main + +jobs: + verify: + name: "fair-software" + runs-on: ubuntu-latest + steps: + - uses: fair-software/howfairis-github-action@0.2.1 + name: Measure compliance with fair-software.eu recommendations + env: + PYCHARM_HOSTED: "Trick colorama into displaying colored output" + with: + MY_REPO_URL: "https://github.com/${{ github.repository }}" \ No newline at end of file diff --git a/LICENSE b/LICENSE index 57fa856..223b1b3 100755 --- a/LICENSE +++ b/LICENSE @@ -1,4 +1,180 @@ -Apache Software License 2.0 +Apache License +Version 2.0, January 2004 +http://www.apache.org/licenses/ + +TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION + +1. Definitions. + +"License" shall mean the terms and conditions for use, reproduction, +and distribution as defined by Sections 1 through 9 of this document. + +"Licensor" shall mean the copyright owner or entity authorized by +the copyright owner that is granting the License. + +"Legal Entity" shall mean the union of the acting entity and all +other entities that control, are controlled by, or are under common +control with that entity. For the purposes of this definition, +"control" means (i) the power, direct or indirect, to cause the +direction or management of such entity, whether by contract or +otherwise, or (ii) ownership of fifty percent (50%) or more of the +outstanding shares, or (iii) beneficial ownership of such entity. + +"You" (or "Your") shall mean an individual or Legal Entity +exercising permissions granted by this License. + +"Source" form shall mean the preferred form for making modifications, +including but not limited to software source code, documentation +source, and configuration files. + +"Object" form shall mean any form resulting from mechanical +transformation or translation of a Source form, including but +not limited to compiled object code, generated documentation, +and conversions to other media types. + +"Work" shall mean the work of authorship, whether in Source or +Object form, made available under the License, as indicated by a +copyright notice that is included in or attached to the work +(an example is provided in the Appendix below). + +"Derivative Works" shall mean any work, whether in Source or Object +form, that is based on (or derived from) the Work and for which the +editorial revisions, annotations, elaborations, or other modifications +represent, as a whole, an original work of authorship. For the purposes +of this License, Derivative Works shall not include works that remain +separable from, or merely link (or bind by name) to the interfaces of, +the Work and Derivative Works thereof. + +"Contribution" shall mean any work of authorship, including +the original version of the Work and any modifications or additions +to that Work or Derivative Works thereof, that is intentionally +submitted to Licensor for inclusion in the Work by the copyright owner +or by an individual or Legal Entity authorized to submit on behalf of +the copyright owner. For the purposes of this definition, "submitted" +means any form of electronic, verbal, or written communication sent +to the Licensor or its representatives, including but not limited to +communication on electronic mailing lists, source code control systems, +and issue tracking systems that are managed by, or on behalf of, the +Licensor for the purpose of discussing and improving the Work, but +excluding communication that is conspicuously marked or otherwise +designated in writing by the copyright owner as "Not a Contribution." + +"Contributor" shall mean Licensor and any individual or Legal Entity +on behalf of whom a Contribution has been received by Licensor and +subsequently incorporated within the Work. + +2. Grant of Copyright License. Subject to the terms and conditions of +this License, each Contributor hereby grants to You a perpetual, +worldwide, non-exclusive, no-charge, royalty-free, irrevocable +copyright license to reproduce, prepare Derivative Works of, +publicly display, publicly perform, sublicense, and distribute the +Work and such Derivative Works in Source or Object form. + +3. Grant of Patent License. Subject to the terms and conditions of +this License, each Contributor hereby grants to You a perpetual, +worldwide, non-exclusive, no-charge, royalty-free, irrevocable +(except as stated in this section) patent license to make, have made, +use, offer to sell, sell, import, and otherwise transfer the Work, +where such license applies only to those patent claims licensable +by such Contributor that are necessarily infringed by their +Contribution(s) alone or by combination of their Contribution(s) +with the Work to which such Contribution(s) was submitted. If You +institute patent litigation against any entity (including a +cross-claim or counterclaim in a lawsuit) alleging that the Work +or a Contribution incorporated within the Work constitutes direct +or contributory patent infringement, then any patent licenses +granted to You under this License for that Work shall terminate +as of the date such litigation is filed. + +4. Redistribution. You may reproduce and distribute copies of the +Work or Derivative Works thereof in any medium, with or without +modifications, and in Source or Object form, provided that You +meet the following conditions: + +(a) You must give any other recipients of the Work or +Derivative Works a copy of this License; and + +(b) You must cause any modified files to carry prominent notices +stating that You changed the files; and + +(c) You must retain, in the Source form of any Derivative Works +that You distribute, all copyright, patent, trademark, and +attribution notices from the Source form of the Work, +excluding those notices that do not pertain to any part of +the Derivative Works; and + +(d) If the Work includes a "NOTICE" text file as part of its +distribution, then any Derivative Works that You distribute must +include a readable copy of the attribution notices contained +within such NOTICE file, excluding those notices that do not +pertain to any part of the Derivative Works, in at least one +of the following places: within a NOTICE text file distributed +as part of the Derivative Works; within the Source form or +documentation, if provided along with the Derivative Works; or, +within a display generated by the Derivative Works, if and +wherever such third-party notices normally appear. The contents +of the NOTICE file are for informational purposes only and +do not modify the License. You may add Your own attribution +notices within Derivative Works that You distribute, alongside +or as an addendum to the NOTICE text from the Work, provided +that such additional attribution notices cannot be construed +as modifying the License. + +You may add Your own copyright statement to Your modifications and +may provide additional or different license terms and conditions +for use, reproduction, or distribution of Your modifications, or +for any such Derivative Works as a whole, provided Your use, +reproduction, and distribution of the Work otherwise complies with +the conditions stated in this License. + +5. Submission of Contributions. Unless You explicitly state otherwise, +any Contribution intentionally submitted for inclusion in the Work +by You to the Licensor shall be under the terms and conditions of +this License, without any additional terms or conditions. +Notwithstanding the above, nothing herein shall supersede or modify +the terms of any separate license agreement you may have executed +with Licensor regarding such Contributions. + +6. Trademarks. This License does not grant permission to use the trade +names, trademarks, service marks, or product names of the Licensor, +except as required for reasonable and customary use in describing the +origin of the Work and reproducing the content of the NOTICE file. + +7. Disclaimer of Warranty. Unless required by applicable law or +agreed to in writing, Licensor provides the Work (and each +Contributor provides its Contributions) on an "AS IS" BASIS, +WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or +implied, including, without limitation, any warranties or conditions +of TITLE, NON-INFRINGEMENT, MERCHANTABILITY, or FITNESS FOR A +PARTICULAR PURPOSE. You are solely responsible for determining the +appropriateness of using or redistributing the Work and assume any +risks associated with Your exercise of permissions under this License. + +8. Limitation of Liability. In no event and under no legal theory, +whether in tort (including negligence), contract, or otherwise, +unless required by applicable law (such as deliberate and grossly +negligent acts) or agreed to in writing, shall any Contributor be +liable to You for damages, including any direct, indirect, special, +incidental, or consequential damages of any character arising as a +result of this License or out of the use or inability to use the +Work (including but not limited to damages for loss of goodwill, +work stoppage, computer failure or malfunction, or any and all +other commercial damages or losses), even if such Contributor +has been advised of the possibility of such damages. + +9. Accepting Warranty or Additional Liability. While redistributing +the Work or Derivative Works thereof, You may choose to offer, +and charge a fee for, acceptance of support, warranty, indemnity, +or other liability obligations and/or rights consistent with this +License. However, in accepting such obligations, You may act only +on Your own behalf and on Your sole responsibility, not on behalf +of any other Contributor, and only if You agree to indemnify, +defend, and hold each Contributor harmless for any liability +incurred by, or claims asserted against, such Contributor by reason +of your accepting any such warranty or additional liability. + +END OF TERMS AND CONDITIONS + Copyright (c) 2022, Pablo Rodríguez, Peter Kok and Vedran Kasalica diff --git a/README.md b/README.md index 52f2640..c6461d4 100644 --- a/README.md +++ b/README.md @@ -1,10 +1,15 @@ -![Python package](https://github.com/biomarkersparkinson/tsdf/workflows/Python%20package/badge.svg) -[![PyPI](https://img.shields.io/pypi/v/tsdf.svg)](https://pypi.python.org/pypi/tsdf/) -[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.7867899.svg)](https://doi.org/10.5281/zenodo.7867899) - # tsdf +| Badges | | +|:----:|----| +| **Packages and Releases** | [![Latest release](https://img.shields.io/github/release/biomarkersparkinson/tsdf.svg)](https://github.com/biomarkersparkinson/tsdf/releases/latest) [![PyPI](https://img.shields.io/pypi/v/tsdf.svg)](https://pypi.python.org/pypi/tsdf/) [![Static Badge](https://img.shields.io/badge/RSD-tsdf-lib)](https://research-software-directory.org/software/tsdf) | +| **Build Status** | ![Python package](https://github.com/biomarkersparkinson/tsdf/workflows/Python%20package/badge.svg) | +| **DOI** | [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.7867899.svg)](https://doi.org/10.5281/zenodo.7867899) | +| **License** | [![GitHub license](https://img.shields.io/github/license/biomarkersparkinson/tsdf)](https://github.com/biomarkersparkinson/tsdf/blob/master/LICENSE) | +| **Fairness** | [![fair-software.eu](https://img.shields.io/badge/fair--software.eu-%E2%97%8F%20%20%E2%97%8F%20%20%E2%97%8F%20%20%E2%97%8F%20%20%E2%97%8F-green)](https://fair-software.eu) [![OpenSSF Best Practices](https://bestpractices.coreinfrastructure.org/projects/8083/badge)](https://www.bestpractices.dev/projects/8083) | + + A package to load [TSDF data](https://arxiv.org/abs/2211.11294) into Python ## Installation