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Continuous integration Test coverage All Contributors

BioSimulations-ModelDB

BioSimulations-ModelDB provides a command-line application for publishing the ModelDB model repository of neural models to the BioSimulations repository for simulation projects.

This command-line program is run weekly by the GitHub action in this repository.

Installation

Requirements

  • Python >= 3.7
  • pip
  • XPP

Install latest revision from GitHub

git clone --recurse-submodules https://github.com/biosimulations/biosimulations-modeldb
pip install biosimulations-modeldb/

API documentation

API documentation is available here.

License

This package is released under the MIT license.

Development team

This package was developed by the Karr Lab at the Icahn School of Medicine at Mount Sinai in New York and the Center for Reproducible Biomedical Modeling. ModelDB was developed by the Sense Lab at Yale University with assistance from the contributors listed here.

Contributing to BioSimulations-ModelDB

We enthusiastically welcome contributions to BioSimulations-ModelDB! Please see the guide to contributing and the developer's code of conduct.

Acknowledgements

This work was supported by National Institutes of Health award P41EB023912.

Questions and comments

Please contact the BioSimulations Team with any questions or comments about this package. Please contact the ModelDB Team with any questions or comments about ModelDB.