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modify mydisease.info / disgenet to account for score #900

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andrewsu opened this issue Nov 8, 2024 · 0 comments
Open

modify mydisease.info / disgenet to account for score #900

andrewsu opened this issue Nov 8, 2024 · 0 comments

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@andrewsu
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andrewsu commented Nov 8, 2024

In NCATSTranslator/Feedback#479, BTE is retrieving a low-scoring gene-disease edge from disgenet via mydisease.info. I propose that we add a score threshold for disgenet to BTE. I think that involves allowing filters on this field in mydisease (e.g., https://mydisease.info/v1/disease/MONDO:0020333?filter:disgenet.genes_related_to_disease.score:>0.5) and then modifying the mydisease.info smartAPI annotation to take advantage of that filtering capability. Based on my cursory view, a threshold of 0.5 seems like a good starting point.

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