Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Update DrugBank with its vocabulary data #141

Open
erikyao opened this issue Aug 2, 2022 · 2 comments
Open

Update DrugBank with its vocabulary data #141

erikyao opened this issue Aug 2, 2022 · 2 comments
Assignees

Comments

@erikyao
Copy link
Contributor

erikyao commented Aug 2, 2022

Thanks to @rjawesome, we now know the existence of DrugBank Vocabulary data. They can be used to update our Drugbank API.

P.S. there is an SDF file of drug structures as well on the above page.

@erikyao erikyao changed the title Update DrugBank with Vocabulary data Update DrugBank with its vocabulary data Aug 2, 2022
@ravila4
Copy link
Contributor

ravila4 commented Aug 3, 2022

@newgene @erikyao It's great that we can include some Drugbank data in MyChem API. The csv file does not contain all the information that the old data had, so the parser needs to be completely rewritten. Perhaps we can archive the old mongodb collection and parser, in case we ever need it for internal use.

Regarding the SDF structure file, we don't store 3D structure information from any other datasources, so I don't think we will be parsing it.

@erikyao
Copy link
Contributor Author

erikyao commented Aug 3, 2022

@ravila4 sounds good to me. Also we can try introducing it as a new individual plugin, rather than overwriting the old one.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants