diff --git a/src/hub/dataload/sources/civic/civic_parser.py b/src/hub/dataload/sources/civic/civic_parser.py index 1618631e..a21e6aee 100644 --- a/src/hub/dataload/sources/civic/civic_parser.py +++ b/src/hub/dataload/sources/civic/civic_parser.py @@ -88,6 +88,7 @@ def load_data(data_folder): new_doc["civic"].pop("myVariantInfo") new_doc = remove_nodes_and_edges(new_doc) new_doc["civic"]["molecularProfiles"] = new_doc["civic"]["molecularProfiles"]["nodes"] + new_doc["civic"]["v"] = "1.0" yield dict_sweep(unlist(new_doc), ['', 'null', 'N/A', None, [], {}]) logging.info("number of ids with ref, alt, chrom: {}".format(no_case1))