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<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
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<title>www.nematodes.org</title>
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<body>
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<h1 align="left">NEMBASE4 data summary - numbers and sources</h1>
<table cellspacing="4" padding=1>
<tr><td valign="bottom"><strong>NEMBASE4 identifier</strong></td>
<td valign="bottom"><strong>Species<em> </em></strong></td>
<td valign="bottom"><div align="center"><strong>Clade</strong></div></td>
<td valign="bottom"><strong>Life habit</strong></td>
<td valign="bottom"><div align="right"><strong>Number of ESTs</strong></div></td>
<td valign="bottom"><div align="right"><strong>Number of cDNA libraries</strong></div></td>
<td valign="bottom"><div align="right"><strong>Number of NEMBASE4 clusters</strong></div></td>
<td valign="bottom"><strong>References</strong></td>
</tr>
<tr><td><strong>ABC</strong></td><td><em>Ancylostoma braziliense</em></td><td><div align="center">V</div></td><td>vgp</td><td><div align="right">19</div></td><td><div align="right">1</div></td><td><div align="right">18</div></td><td class="mainSmall">(Costa et al., 2008)</td></tr>
<tr><td><strong>ACC</strong></td><td><em>Ancylostoma caninum</em></td><td><div align="center">V</div></td><td>vgp</td><td><div align="right">78935</div></td><td><div align="right">15</div></td><td><div align="right">25911</div></td><td class="mainSmall">a</td></tr>
<tr><td><strong>AYC</strong></td><td><em>Ancylostoma ceylanicum</em></td><td><div align="center">V</div></td><td>vgp</td><td><div align="right">10551</div></td><td><div align="right">9</div></td><td><div align="right">3489</div></td><td class="mainSmall">a</td></tr>
<tr><td><strong>AAC</strong></td><td><em>Angiostrongylus cantonensis</em></td><td><div align="center">V</div></td><td>vgp</td><td><div align="right">1191</div></td><td><div align="right">4</div></td><td><div align="right">650</div></td><td class="mainSmall">(He et al., 2009)</td></tr>
<tr><td><strong>AIC</strong></td><td><em>Anisakis simplex</em></td><td><div align="center">III</div></td><td>vtp</td><td><div align="right">473</div></td><td><div align="right">1</div></td><td><div align="right">320</div></td><td class="mainSmall">b</td></tr>
<tr><td><strong>ALC</strong></td><td><em>Ascaris lumbricoides</em></td><td><div align="center">III</div></td><td>vgp</td><td><div align="right">1822</div></td><td><div align="right">1</div></td><td><div align="right">853</div></td><td class="mainSmall">(Wasmuth et al., 2008)</td></tr>
<tr><td><strong>ASC</strong></td><td><em>Ascaris suum</em></td><td><div align="center">III</div></td><td>vgp</td><td><div align="right">55343</div></td><td><div align="right">38</div></td><td><div align="right">13284</div></td><td class="mainSmall">(Wasmuth et al., 2008)</td></tr>
<tr><td><strong>BMC</strong></td><td><em>Brugia malayi</em></td><td><div align="center">III</div></td><td>vtp</td><td><div align="right">25844</div></td><td><div align="right">25</div></td><td><div align="right">9822</div></td><td class="mainSmall">(Blaxter et al., 1996; Blaxter et al., 2002; Li et al., 2009)}</td></tr>
<tr><td><strong>BPC</strong></td><td><em>Brugia pahangi</em></td><td><div align="center">III</div></td><td>vtp</td><td><div align="right">28</div></td><td><div align="right">2</div></td><td><div align="right">28</div></td><td class="mainSmall">(Emes et al., 2002)</td></tr>
<tr><td><strong>BUC</strong></td><td><em>Bursaphelenchus mucronatus</em></td><td><div align="center">IV</div></td><td>pep</td><td><div align="right">3191</div></td><td><div align="right">1</div></td><td><div align="right">2264</div></td><td class="mainSmall">(Kikuchi et al., 2007)</td></tr>
<tr><td><strong>BXC</strong></td><td><em>Bursaphelenchus xylophilus</em></td><td><div align="center">IV</div></td><td>pep</td><td><div align="right">13338</div></td><td><div align="right">6</div></td><td><div align="right">6660</div></td><td class="mainSmall">(Kikuchi et al., 2007)</td></tr>
<tr><td><strong>CBC</strong></td><td><em>Caenorhabditis brenneri</em></td><td><div align="center">V</div></td><td>fl</td><td><div align="right">29443</div></td><td><div align="right">3</div></td><td><div align="right">10045</div></td><td class="mainSmall">a</td></tr>
<tr><td><strong>CGC</strong></td><td><em>Caenorhabditis briggsae</em></td><td><div align="center">V</div></td><td>fl*</td><td><div align="right">2406</div></td><td><div align="right">1</div></td><td><div align="right">1450</div></td><td class="mainSmall">(Stein et al., 2003)</td></tr>
<tr><td><strong>CJC</strong></td><td><em>Caenorhabditis japonica</em></td><td><div align="center">V</div></td><td>fl*</td><td><div align="right">31598</div></td><td><div align="right">0</div></td><td><div align="right">8970</div></td><td class="mainSmall">a</td></tr>
<tr><td><strong>CRC</strong></td><td><em>Caenorhabditis remanei</em></td><td><div align="center">V</div></td><td>fl</td><td><div align="right">20166</div></td><td><div align="right">2</div></td><td><div align="right">9148</div></td><td class="mainSmall">a</td></tr>
<tr><td><strong>CSC</strong></td><td><em>Caenorhabditis sp_5_AC-2008</em></td><td><div align="center">V</div></td><td>fl</td><td><div align="right">3866</div></td><td><div align="right">1</div></td><td><div align="right">2245</div></td><td class="mainSmall">c</td></tr>
<tr><td><strong>DVC</strong></td><td><em>Dictyocaulus viviparus</em></td><td><div align="center">IV</div></td><td>vlp</td><td><div align="right">4423</div></td><td><div align="right">3</div></td><td><div align="right">2433</div></td><td class="mainSmall">(Ranganathan et al., 2007)</td></tr>
<tr><td><strong>DIC</strong></td><td><em>Dirofilaria immitis</em></td><td><div align="center">III</div></td><td>vtp</td><td><div align="right">3762</div></td><td><div align="right">2</div></td><td><div align="right">1783</div></td><td class="mainSmall">(Yin et al., 2006)</td></tr>
<tr><td><strong>DAC</strong></td><td><em>Ditylenchus africanus</em></td><td><div align="center">IV</div></td><td>pxp</td><td><div align="right">4289</div></td><td><div align="right">1</div></td><td><div align="right">2513</div></td><td class="mainSmall">a</td></tr>
<tr><td><strong>GMC</strong></td><td><em>Globodera mexicana</em></td><td><div align="center">IV</div></td><td>pep</td><td><div align="right">17</div></td><td><div align="right">1</div></td><td><div align="right">17</div></td><td class="mainSmall">(Grenier et al., 2002)</td></tr>
<tr><td><strong>GPC</strong></td><td><em>Globodera pallida</em></td><td><div align="center">IV</div></td><td>pep</td><td><div align="right">3900</div></td><td><div align="right">4</div></td><td><div align="right">2564</div></td><td class="mainSmall">(Jones et al., 2009)</td></tr>
<tr><td><strong>GRC</strong></td><td><em>Globodera rostochiensis</em></td><td><div align="center">IV</div></td><td>pep</td><td><div align="right">11658</div></td><td><div align="right">6</div></td><td><div align="right">4540</div></td><td class="mainSmall">a</td></tr>
<tr><td><strong>HCC</strong></td><td><em>Haemonchus contortus</em></td><td><div align="center">V</div></td><td>vgp</td><td><div align="right">22257</div></td><td><div align="right">14</div></td><td><div align="right">4972</div></td><td class="mainSmall">(Wasmuth et al., 2008)</td></tr>
<tr><td><strong>HGC</strong></td><td><em>Heterodera glycines</em></td><td><div align="center">IV</div></td><td>pep</td><td><div align="right">24167</div></td><td><div align="right">14</div></td><td><div align="right">9174</div></td><td class="mainSmall">a, d</td></tr>
<tr><td><strong>HSC</strong></td><td><em>Heterodera schachtii</em></td><td><div align="center">IV</div></td><td>pep</td><td><div align="right">2791</div></td><td><div align="right">3</div></td><td><div align="right">1371</div></td><td class="mainSmall">a</td></tr>
<tr><td><strong>HBC</strong></td><td><em>Heterorhabditis bacteriophora</em></td><td><div align="center">V</div></td><td>epn</td><td><div align="right">42354</div></td><td><div align="right">8</div></td><td><div align="right">10483</div></td><td class="mainSmall">a</td></tr>
<tr><td><strong>LSC</strong></td><td><em>Litomosoides sigmodontis</em></td><td><div align="center">III</div></td><td>vtp</td><td><div align="right">2699</div></td><td><div align="right">3</div></td><td><div align="right">1631</div></td><td class="mainSmall">(Allen et al., 2000)</td></tr>
<tr><td><strong>LLC</strong></td><td><em>Loa loa</em></td><td><div align="center">III</div></td><td>vtp</td><td><div align="right">27</div></td><td><div align="right">1</div></td><td><div align="right">26</div></td><td class="mainSmall">e</td></tr>
<tr><td><strong>MAC</strong></td><td><em>Meloidogyne arenaria</em></td><td><div align="center">IV</div></td><td>pep</td><td><div align="right">4979</div></td><td><div align="right">5</div></td><td><div align="right">2623</div></td><td class="mainSmall">f</td></tr>
<tr><td><strong>MCC</strong></td><td><em>Meloidogyne chitwoodi</em></td><td><div align="center">IV</div></td><td>pep</td><td><div align="right">11938</div></td><td><div align="right">4</div></td><td><div align="right">3793</div></td><td class="mainSmall">a</td></tr>
<tr><td><strong>MHC</strong></td><td><em>Meloidogyne hapla</em></td><td><div align="center">IV</div></td><td>pep</td><td><div align="right">23992</div></td><td><div align="right">6</div></td><td><div align="right">6946</div></td><td class="mainSmall">a</td></tr>
<tr><td><strong>MIC</strong></td><td><em>Meloidogyne incognita</em></td><td><div align="center">IV</div></td><td>pep</td><td><div align="right">19806</div></td><td><div align="right">11</div></td><td><div align="right">5985</div></td><td class="mainSmall">(Dubreuil et al., 2007)</td></tr>
<tr><td><strong>MJC</strong></td><td><em>Meloidogyne javanica</em></td><td><div align="center">IV</div></td><td>pep</td><td><div align="right">7275</div></td><td><div align="right">8</div></td><td><div align="right">3369</div></td><td class="mainSmall">a</td></tr>
<tr><td><strong>MPC</strong></td><td><em>Meloidogyne paranaensis</em></td><td><div align="center">IV</div></td><td>pep</td><td><div align="right">3638</div></td><td><div align="right">2</div></td><td><div align="right">1636</div></td><td class="mainSmall">a</td></tr>
<tr><td><strong>NAC</strong></td><td><em>Necator americanus</em></td><td><div align="center">V</div></td><td>vgp</td><td><div align="right">5019</div></td><td><div align="right">4</div></td><td><div align="right">2446</div></td><td class="mainSmall">(Rabelo et al., 2009)</td></tr>
<tr><td><strong>NBC</strong></td><td><em>Nippostrongylus brasiliensis</em></td><td><div align="center">V</div></td><td>vgp</td><td><div align="right">13673</div></td><td><div align="right">8</div></td><td><div align="right">3569</div></td><td class="mainSmall">(Harcus et al., 2004) and *</td></tr>
<tr><td><strong>ODC</strong></td><td><em>Oesophagostomum dentatum</em></td><td><div align="center">V</div></td><td>vgp</td><td><div align="right">299</div></td><td><div align="right">2</div></td><td><div align="right">249</div></td><td class="mainSmall">(Cottee et al., 2006)</td></tr>
<tr><td><strong>OFC</strong></td><td><em>Onchocerca flexuosa</em></td><td><div align="center">III</div></td><td>vtp</td><td><div align="right">2063</div></td><td><div align="right">2</div></td><td><div align="right">1525</div></td><td class="mainSmall">a</td></tr>
<tr><td><strong>OCC</strong></td><td><em>Onchocerca ochengi</em></td><td><div align="center">III</div></td><td>vtp</td><td><div align="right">59</div></td><td><div align="right">1</div></td><td><div align="right">37</div></td><td class="mainSmall">g</td></tr>
<tr><td><strong>OVC</strong></td><td><em>Onchocerca volvulus</em></td><td><div align="center">III</div></td><td>vtp</td><td><div align="right">14791</div></td><td><div align="right">10</div></td><td><div align="right">5105</div></td>
<td class="mainSmall">(Lizotte-Waniewski et al., 2000; Pellerone et al., 2003)</td>
</tr>
<tr><td><strong>OOC</strong></td><td><em>Ostertagia ostertagi</em></td><td><div align="center">V</div></td><td>vgp</td><td><div align="right">6761</div></td><td><div align="right">10</div></td><td><div align="right">2367</div></td><td class="mainSmall">(Vercauteren et al., 2003)</td></tr>
<tr><td><strong>PSC</strong></td><td><em>Panagrolaimus superbus</em></td><td><div align="center">IV</div></td><td>fl</td><td><div align="right">7606</div></td><td><div align="right">0</div></td><td><div align="right">3957</div></td><td class="mainSmall">h</td></tr>
<tr><td><strong>PTC</strong></td><td><em>Parastrongyloides trichosuri</em></td><td><div align="center">IV</div></td><td>vgp*</td><td><div align="right">7776</div></td><td><div align="right">6</div></td><td><div align="right">3128</div></td><td class="mainSmall">a</td></tr>
<tr><td><strong>PAC</strong></td><td><em>Parelaphostrongylus tenuis</em></td><td><div align="center">V</div></td><td>vgp</td><td><div align="right">99</div></td><td><div align="right">1</div></td><td><div align="right">95</div></td><td class="mainSmall">i</td></tr>
<tr><td><strong>PEC</strong></td><td><em>Pratylenchus penetrans</em></td><td><div align="center">IV</div></td><td>pep</td><td><div align="right">1919</div></td><td><div align="right">1</div></td><td><div align="right">410</div></td><td class="mainSmall">a</td></tr>
<tr><td><strong>PVC</strong></td><td><em>Pratylenchus vulnus</em></td><td><div align="center">IV</div></td><td>pep</td><td><div align="right">5762</div></td><td><div align="right">3</div></td><td><div align="right">1824</div></td><td class="mainSmall">a</td></tr>
<tr><td><strong>PPC</strong></td><td><em>Pristionchus pacificus</em></td><td><div align="center">V</div></td><td>fl</td><td><div align="right">35736</div></td><td><div align="right">11</div></td><td><div align="right">10577</div></td><td class="mainSmall">(Srinivasan et al., 2004)</td></tr>
<tr><td><strong>RSC</strong></td><td><em>Radopholus similis</em></td><td><div align="center">IV</div></td><td>pep</td><td><div align="right">7164</div></td><td><div align="right">5</div></td><td><div align="right">3871</div></td><td class="mainSmall">(Jacob et al., 2008) and j</td></tr>
<tr><td><strong>SCC</strong></td><td><em>Steinernema carpocapsae</em></td><td><div align="center">IV</div></td><td>epn</td><td><div align="right">44</div></td><td><div align="right">1</div></td><td><div align="right">43</div></td><td class="mainSmall">(Hao et al., 2010)</td></tr>
<tr><td><strong>SFC</strong></td><td><em>Steinernema feltiae</em></td><td><div align="center">IV</div></td><td>epn</td><td><div align="right">83</div></td><td><div align="right">1</div></td><td><div align="right">74</div></td><td class="mainSmall">(Gal et al., 2003)</td></tr>
<tr><td><strong>SRC</strong></td><td><em>Strongyloides ratti</em></td><td><div align="center">IV</div></td><td>vgp*</td><td><div align="right">26400</div></td><td><div align="right">12</div></td><td><div align="right">5058</div></td><td class="mainSmall">(Evans et al., 2008)</td></tr>
<tr><td><strong>SSC</strong></td><td><em>Strongyloides stercoralis</em></td><td><div align="center">IV</div></td><td>vgp*</td><td><div align="right">11365</div></td><td><div align="right">3</div></td><td><div align="right">3681</div></td><td class="mainSmall">a</td></tr>
<tr><td><strong>TDC</strong></td><td><em>Teladorsagia circumcincta</em></td><td><div align="center">V</div></td><td>vgp</td><td><div align="right">6011</div></td><td><div align="right">5</div></td><td><div align="right">2262</div></td><td class="mainSmall">(Parkinson et al., 2004; Nisbet et al., 2008)</td></tr>
<tr><td><strong>TLC</strong></td><td><em>Toxascaris leonina</em></td><td><div align="center">III</div></td><td>vgp</td><td><div align="right">434</div></td><td><div align="right">1</div></td><td><div align="right">279</div></td><td class="mainSmall">k</td></tr>
<tr><td><strong>TCC</strong></td><td><em>Toxocara canis</em></td><td><div align="center">III</div></td><td>vgp**</td><td><div align="right">4791</div></td><td><div align="right">6</div></td><td><div align="right">1537</div></td><td class="mainSmall">(Parkinson et al., 2004; Callister et al., 2008) and l</td></tr>
<tr><td><strong>TSC</strong></td><td><em>Trichinella spiralis</em></td><td><div align="center">I</div></td><td>vgp**</td><td><div align="right">24678</div></td><td><div align="right">8</div></td><td><div align="right">8509</div></td><td class="mainSmall">a</td></tr>
<tr><td><strong>TIC</strong></td><td><em>Trichostrongylus vitrinus</em></td><td><div align="center">V</div></td><td>vgp</td><td><div align="right">367</div></td><td><div align="right">2</div></td><td><div align="right">359</div></td><td class="mainSmall">(Nisbet and Gasser, 2004)</td></tr>
<tr><td><strong>TMC</strong></td><td><em>Trichuris muris</em></td><td><div align="center">I</div></td><td>vgp</td><td><div align="right">6891</div></td><td><div align="right">3</div></td><td><div align="right">3037</div></td><td class="mainSmall">a</td></tr>
<tr><td><strong>TVC</strong></td><td><em>Trichuris vulpis</em></td><td><div align="center">I</div></td><td>vgp</td><td><div align="right">2959</div></td><td><div align="right">1</div></td><td><div align="right">1258</div></td><td class="mainSmall">a</td></tr>
<tr><td><strong>WBC</strong></td><td><em>Wuchereria bancrofti</em></td><td><div align="center">III</div></td><td>vtp</td><td><div align="right">4871</div></td><td><div align="right">3</div></td><td><div align="right">2222</div></td><td class="mainSmall">a</td></tr>
<tr><td><strong>XIC</strong></td><td><em>Xiphinema index</em></td><td><div align="center">I</div></td><td>pxp</td><td><div align="right">9283</div></td><td><div align="right">7</div></td><td><div align="right">4591</div></td><td class="mainSmall">a</td></tr>
<tr><td><strong>ZPC</strong></td><td><em>Zeldia punctata</em></td><td><div align="center">IV</div></td><td>fl</td><td><div align="right">390</div></td><td><div align="right">1</div></td><td><div align="right">209</div></td><td class="mainSmall">a</td></tr>
<tr><td><strong>Total</strong></td><td><strong>62 species </strong></td>
<td><div align="center"></div></td><td></td><td><div align="right"><strong>679480</strong></div></td>
<td><div align="right"><strong>324</strong></div></td>
<td><div align="right"><strong>233295</strong></div></td>
<td class="mainSmall"></td></tr>
</table>
<p>
Clade: Nematode clades are as defined in Blaxter et al 1998 (Blaxter et al., 1998) (see also (Meldal et al., 2007)). I: Dorylaimia, including Dorylaimida and Trichocephalida; III: Spiruria, including Spiruromorpha and Ascaridida; IV: Tylenchia, including Cephalobomorpha, Strongyloidoiea, and Tylenchida; V: Rhabditia, including Rhabditida, Strongylida, and Diplogasterida. There are no Clade II (Enoplia) expressed sequence tag (EST) datasets at present.<br>
Life habit: epn: entomopathogenic nematode; fl: free-living; fl* free-living, but associated with arthropod transport hosts; pxp: plant exoparasite; vgp: vertebrate gut parasite; vgp*: vertebrate gut parasite with free-living cycle(s); vgp**: vertebrate gut parasite with intracellular resting stage; vtp: vertebrate tissue parasite.<br>
<br>
a No specific publication associated with this dataset; data produced by Washington University of St. Louis Genome Sequencing Center (see Wasmuth et al., 2008))<br>
b No specific publication associated with this dataset; data produced by College of Medicine, Pusan University, Korea.<br>
c Asher Cutter and Mark Blaxter, unpublished data.<br>
d Some data produced by National Agricultural Research Center for Hokkaido Region, Sapporo, Hokkaido 062-8555, Japan.<br>
e No specific publication associated with this dataset; data produced by Laboratory of Parasitic Diseases, National Institute of Allergy and Infectious Diseases, NIAID, NIH, USA.<br>
f No specific publication associated with this dataset; data produced by College of Plant Protection, Nanjing Agricultural University, Weigang, Nanjing, China.<br>
g No specific publication associated with this dataset; data produced by Molecular Parasitology, Department of Biological Sciences, Smith College, Northampton, USA.<br>
h Ann Burnell and colleagues, UI Maynooth, unpublished data.<br>
i No specific publication associated with this dataset; data produced by James A. Baker Institute, Cornell University, Ithaca, NY, USA<br>
j No specific publication associated with this dataset; data produced by Department of Plant Pathology, College of Natural Resources and Environment, South China Agricultural University, Guangdong, China.<br>
k No specific publication associated with this dataset; data produced by Department of Parasitology, Pusan National University, School of Medicine, Seo-gu, Busan, Korea.<br>
l No specific publication associated with this dataset; data produced by Department of Veterinary Medicine, Rongchang Campus, Southwest University, Chongqing Municipality, China<br>
<br>
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