DESCRIPTION

Package: SpaLinker
Type: Package
Title: SpaLinker: Deciphering tumor microenvironment spatial
        characteristics and linking them with patient phenotypes
Version: 0.1.0
Author: Xiaojie Cheng
Maintainer: Xiaojie Cheng <lvlanzi0306@gmail.com>
Description: SpaLinker is a novel framework that utilizes spatial transcriptomics data to provide a comprehensive characterization of the TME across molecular, cellular, and tissue structure levels. Specifically, SpaLinker aims to link the spatial features of TME with patient prognosis using bulk RNA-seq profiles annotated with clinical information.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Depends: R (>= 4.3.0), Seurat (>= 4.3.0)
Imports: SeuratObject, ggplot2, foreach, NMF, igraph, progressr,
        survival, ROCR, msigdbr, doParallel, parallel, fpc, cluster,
        cowplot, scatterpie, grDevices
Suggests: WGCNA, BayesSpace, SingleCellExperiment, doSNOW, DESeq2,
        GSVA, AUCell, UCell,
RoxygenNote: 7.2.3
NeedsCompilation: no
Packaged: 2024-11-17 15:44:47 UTC; chengxj