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fix #51 (#55)
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afermg authored Nov 25, 2024
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# How-to Guides
You can use the sidebar on the left to find the most common analyses. They are sorted in the usual order in which data is processed.

## Accessing a live coding environment

This table provides direct links to run the guides on your browser (as Jupyter notebooks).

| Google Collab |
You can use the sidebar on the left to find tutorials demoing the most common analyses, or click the links in the list below to run the guides directly on your browser in a Google Colab live coding environment. |
|---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| [Retrieve JUMP profiles](https://colab.research.google.com/github/broadinstitute/2023_12_JUMP_data_only_vignettes/blob/colab/colab/1_retrieve_profiles.ipynb) |
| [Add metadata to profiles](https://colab.research.google.com/github/broadinstitute/2023_12_JUMP_data_only_vignettes/blob/colab/colab/2_add_metadata.ipynb) |
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| [Explore perturbation clusters](https://colab.research.google.com/github/broadinstitute/2023_12_JUMP_data_only_vignettes/blob/colab/colab/5_explore_distance_clusters.ipynb) |
| [Query genes for more info](https://colab.research.google.com/github/broadinstitute/2023_12_JUMP_data_only_vignettes/blob/colab/colab/6_query_genes_externally.ipynb) |

Alternatively, you can download the notebooks from their respective pages and run them in your local Python environment. We have published a package containing all dependencies, you need only install in your environment using `pip install jump_deps` (Python 3.10 or 3.11).
If you are running the analyses on your computer, we have published a package containing all dependencies, you need only install in your environment using `pip install jump_deps` (Python 3.10 or 3.11).

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