diff --git a/index.md b/index.md index 91aeb40..15855e7 100644 --- a/index.md +++ b/index.md @@ -4,37 +4,7 @@ What is the purpose of this website? To provide up-to-date info on everything JU ## Choose Your Own Path -1. **Just exploring the data?** - - - Use a web interface; no programming required: - * [JUMP-CP Data Explorer](https://phenaid.ardigen.com/jumpcpexplorer/) by Ardigen, - * [JUMP-CP Data Portal](https://www.springscience.com/jump-cp) by Spring Discovery, - * [JUMPer tools](https://github.com/broadinstitute/monorepo/tree/main/libs/jump_rr#quick-data-access) by Carpenter–Singh Lab (Muñoz et al.) - * Morpheus by Broad Institute - - You can look up images for a sample, distinguishing features, most-similar genes or compounds, and more\! - - - -2. **Want to fetch and analyze data?** - - - Follow our [how-to guides](http://howto/) for common analyses - - - -3. **Looking to build tools?** - - - Use our Python libraries [cpgdata](https://github.com/broadinstitute/cpg/tree/main/cpgdata), [jump-portrait](https://github.com/broadinstitute/monorepo/tree/main/libs/jump_portrait), [jump-babel](https://github.com/broadinstitute/monorepo/tree/main/libs/jump_babel) and other libraries in the [monorepo](https://github.com/broadinstitute/monorepo/tree/main) - - Access the [metadata schema](https://github.com/jump-cellpainting/datasets/tree/main/metadata) - -## Need help or more information? - -- Read the papers creating the datasets for experimental and analysis details: - - [CPJUMP1](https://www.nature.com/articles/s41592-024-02241-6) - - JUMP data prod biorxiv - - Morphmap biorxiv -- Raise an issue or ask a question on [Github](https://github.com/jump-cellpainting/datasets/issues) -- Subscribe to updates at [jump-cellpainting.broadinstitute.org/more-info](https://jump-cellpainting.broadinstitute.org/more-info) +[Here](https://github.com/broadinstitute/monorepo/blob/main/libs/jump_rr/README.md#Quick%20data%20access) you can find the up-to-date web tools to explore JUMP from your browser. These are very useful for querying perturbations without needing experience in data analysis or programming. They are also very convenient for a one-off query of the dataset. ### How can I access the How-To guides in a live coding environment?