| title | author | output | bibliography | csl |
|---|---|---|---|---|
A Generic project for the Temperton lab |
Ben Temperton |
pdf_document |
biblio.bib |
isme.csl |
Many of our projects involve the metagenomic analyses of viromes and cellular genomes. Typically, such projects involve the following steps
- Read QC
- Removal of human + vertebrate reads
- Metagenomic assembly using SPAdes
- Identification of viruses using VirSorter, VirFinder and CAT
- Clustering of identified viral genomes into viral populations at 95% ANI
- Gene calling of population representatives using MetaGeneAnnotator
- Clustering of population representatives into ICTV-recognized genera using VContact2
This project serves as a template for encoding these analyses in Snakemake for running on the ISCA infrastructure. To use it, simply create a new project from the Use this template button on this project.