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package.json
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{
"name": "cbioportal-frontend",
"private": true,
"version": "3.3.290",
"workspaces": {
"packages": [
".",
"packages/*"
]
},
"description": "",
"pre-commit": [
"prettierFixCurrentChanges"
],
"scripts": {
"start": "lerna run watch --parallel",
"startSSL": "lerna run watchSSL --parallel",
"watch": "./scripts/env_vars.sh && eval \"$(./scripts/env_vars.sh)\" && cross-env NODE_ENV=development webpack-dev-server --compress",
"watchSSL": "./scripts/env_vars.sh && eval \"$(./scripts/env_vars.sh)\" && cross-env NODE_ENV=development NODE_OPTIONS=--max-old-space-size=4096 webpack-dev-server --compress --https",
"clean": "rimraf dist tsDist common-dist",
"updatePackageVersion": "./scripts/update_package_version.sh",
"build": "./scripts/env_vars.sh && eval \"$(./scripts/env_vars.sh)\" && yarn run buildAll",
"buildAll": "yarn run buildModules && yarn run buildMain",
"buildMain": "yarn run clean && yarn run compileOqlParser && yarn run buildDLL:prod && cross-env NODE_ENV=production NODE_OPTIONS=--max-old-space-size=4096 webpack",
"buildModules": "lerna run build --ignore=cbioportal-frontend --stream",
"publishModules": "lerna publish from-git --yes",
"buildDLL:prod": "yarn run clean && cross-env NODE_ENV=production webpack --config vendor-bundles.webpack.config.js",
"buildDLL:dev": "yarn run clean && cross-env NODE_ENV=development webpack --config vendor-bundles.webpack.config.js",
"build:size": "yarn run clean && yarn run buildDLL:prod && cross-env NODE_ENV=production webpack --json > stats.json",
"buildBootstrap": "sass --style :compressed src/globalStyles/bootstrap-entry.scss src/globalStyles/prefixed-bootstrap.min.css",
"heroku-postbuild": "yarn run build && yarn add [email protected] -g",
"updateAPI": "yarn run fetchAPI && yarn run buildAPI && yarn run updateOncoKbAPI && yarn run updateGenomeNexusAPI",
"convertToSwagger2": "./scripts/convert_to_swagger2.sh && yarn run extendSwagger2Converter",
"fetchAPILocal": "export CBIOPORTAL_URL=http://localhost:8090 && curl -s -L -k ${CBIOPORTAL_URL}/api/v3/api-docs/public | json | grep -v basePath | grep -v termsOfService | grep -v host > packages/cbioportal-ts-api-client/src/generated/CBioPortalAPI-docs.json && curl -s -L -k ${CBIOPORTAL_URL}/api/v3/api-docs/internal | json | grep -v host | grep -v basePath | grep -v termsOfService > packages/cbioportal-ts-api-client/src/generated/CBioPortalAPIInternal-docs.json",
"fetchAPI": "./scripts/env_vars.sh && eval \"$(./scripts/env_vars.sh)\" && curl -s -L -k ${CBIOPORTAL_URL}/api/v3/api-docs/public > packages/cbioportal-ts-api-client/src/generated/CBioPortalAPI-docs.json && curl -s -L -k ${CBIOPORTAL_URL}/api/v3/api-docs/internal | json > packages/cbioportal-ts-api-client/src/generated/CBioPortalAPIInternal-docs.json && yarn run convertToSwagger2",
"extendSwagger2Converter": "node scripts/extend_converter.js packages/cbioportal-ts-api-client/src/generated CBioPortalAPI CBioPortalAPIInternal",
"buildAPI": "node scripts/generate-api.js packages/cbioportal-ts-api-client/src/generated CBioPortalAPI CBioPortalAPIInternal",
"updateOncoKbAPI": "yarn run fetchOncoKbAPI && yarn run buildOncoKbAPI",
"fetchOncoKbAPI": "curl -s -k https://www.oncokb.org/api/v1/v2/api-docs?group=Public%20APIs | json | grep -v basePath | grep -v termsOfService | grep -v host > packages/oncokb-ts-api-client/src/generated/OncoKbAPI-docs.json",
"buildOncoKbAPI": "node scripts/generate-api.js packages/oncokb-ts-api-client/src/generated OncoKbAPI",
"updateG2SAPI": "yarn run fetchG2SAPI && yarn run buildG2SAPI",
"fetchG2SAPI": "curl -s -k http://g2s.genomenexus.org/v2/api-docs?group=api > packages/genome-nexus-ts-api-client/src/generated/Genome2StructureAPI-docs.json",
"buildG2SAPI": "node scripts/generate-api.js packages/genome-nexus-ts-api-client/src/generated Genome2StructureAPI",
"updateGenomeNexusAPI": "yarn run fetchGenomeNexusAPI && yarn run buildGenomeNexusAPI",
"fetchGenomeNexusAPI": "./scripts/env_vars.sh && eval \"$(./scripts/env_vars.sh)\" && curl -s -L -k ${GENOME_NEXUS_URL}/v2/api-docs | json | grep -v basePath | grep -v termsOfService | grep -v host > packages/genome-nexus-ts-api-client/src/generated/GenomeNexusAPI-docs.json && curl -s -L -k ${GENOME_NEXUS_URL}/v2/api-docs?group=internal | json | grep -v basePath | grep -v termsOfService | grep -v host > packages/genome-nexus-ts-api-client/src/generated/GenomeNexusAPIInternal-docs.json",
"buildGenomeNexusAPI": "node scripts/generate-api.js packages/genome-nexus-ts-api-client/src/generated GenomeNexusAPI GenomeNexusAPIInternal",
"updateHotspotGenes": "./scripts/get_hotspot_genes.sh > src/shared/static-data/hotspotGenes.json",
"compileOqlParser": "cd src/shared/lib/oql && pegjs oql-parser.pegjs",
"serveDist": "./scripts/serve_dist.sh",
"serveDistLocalDb": "./end-to-end-test/local/runtime-config/serve_dist.sh",
"testTime": "start_time=`date +%s` && karma start karma.conf.js && echo run time is $(expr `date +%s` - $start_time) s",
"test": "yarn run testMain",
"check-env": "echo ",
"testMain": "jest $GREP --env=jsdom --runInBand --ci --reporters=default --reporters=jest-junit",
"testPackagesCI": "JEST_JUNIT_UNIQUE_OUTPUT_NAME=true JEST_JUNIT_OUTPUT_DIR=/tmp/junit/module/ JEST_JUNIT_OUTPUT_NAME=unit-test-module yarn run testPackages",
"testPackages": "lerna run test --ignore=cbioportal-frontend --stream",
"test:watch": "yarn run testMain:watch",
"testMain:watch": "yarn run testMain --watch",
"test:debug": "yarn run test --debug --browsers=Chrome_with_debugging --single-run=false",
"waitForNetlifyPreview": "node scripts/wait_for_netlify_preview.js",
"findNetlifyDeployId": "node scripts/find_netlify_deploy_id.js",
"prettierFixCurrentChanges": "STAGED_AND_CHANGED_FILES=$(git diff HEAD --name-only --cached --diff-filter=d) && ([ -z \"$STAGED_AND_CHANGED_FILES\" ] && echo \"Nothing to prettify\" || (yarn run prettier --write $(echo $STAGED_AND_CHANGED_FILES) && git add -f $(echo $STAGED_AND_CHANGED_FILES)))",
"prettierCheckCircleCI": "./scripts/env_vars.sh && eval \"$(./scripts/env_vars.sh)\" && git remote add cbio-repo https://github.com/cBioPortal/cbioportal-frontend.git && git fetch cbio-repo $(echo $BRANCH_ENV) && CHANGED_FILES=$(git diff cbio-repo/$(echo $BRANCH_ENV) --name-only --diff-filter=d) && [ ! -z \"$CHANGED_FILES\" ] && yarn run prettier -c $(echo $CHANGED_FILES) && git remote remove cbio-repo",
"prettierFixLocal": "CHANGED_FILES=$(git diff $(echo $BRANCH_ENV) --name-only --diff-filter=d) && ([ ! -z \"$CHANGED_FILES\" ] && yarn run prettier --write $(echo $CHANGED_FILES) || echo \"Nothing to prettify\")",
"prettierAll": "yarn run prettier --write $(git ls-files | grep '\\(.js\\|.ts\\|.scss\\|.css\\)')",
"checkIncorrectImportStatements": "./scripts/check_incorrect_import_statements.sh",
"syncmock": "node src/test/fetchMockData.js --diff",
"e2e:spinup": "./scripts/e2e.sh",
"e2e:local": "export RETRIES=0 && export CBIOPORTAL_URL=http://localhost:8080 && export && export SCREENSHOT_DIRECTORY=/local/screenshots/ && cd end-to-end-test && yarn run test-webdriver-manager-local",
"e2e:remote": "export RETRIES=0 export CBIOPORTAL_URL=https://www.cbioportal.org && export RETRIES=0 && export SCREENSHOT_DIRECTORY=/remote/screenshots/ && rm -r -f end-to-end-test/shared/results && cd end-to-end-test && yarn run test-webdriver-manager-remote",
"e2e:report": "npx http-server end-to-end-test -o /shared/imageCompare.html -p 8089",
"localChromeDriver": "chromedriver"
},
"engines": {
"node": "15.2.1",
"yarn": "1.22.5"
},
"resolutions": {
"mobx": "^6.0.0",
"mobx-react": "6.0.0"
},
"author": "",
"license": "AGPL-3.0-or-later",
"dependencies": {
"3dmol": "^1.3.7",
"@babel/core": "7.4.4",
"@babel/plugin-syntax-dynamic-import": "^7.8.3",
"@babel/plugin-transform-modules-commonjs": "^7.4.4",
"@babel/preset-env": "^7.4.4",
"@babel/preset-react": "^7.0.0",
"@datadog/browser-logs": "^5.28.0",
"@rollup/plugin-commonjs": "^22.0.0",
"@rollup/plugin-image": "^2.1.1",
"@rollup/plugin-json": "^4.1.0",
"@rollup/plugin-node-resolve": "^13.3.0",
"@testing-library/react": "12.1",
"@types/chai": "3.5.2",
"@types/chai-enzyme": "^0.6.2",
"@types/chart.js": "^2.4.6",
"@types/classnames": "0.0.32",
"@types/color-convert": "^2.0.0",
"@types/d3-scale": "^2.0.0",
"@types/d3-scale-chromatic": "^1.3.0",
"@types/detect-browser": "^1.6.0",
"@types/enzyme": "^3.10.8",
"@types/enzyme-adapter-react-16": "^1.0.6",
"@types/expired-storage": "^1.0.0",
"@types/google.analytics": "0.0.39",
"@types/history": "^4.7.8",
"@types/jest": "^27.0.2",
"@types/jquery": "^3.3.31",
"@types/js-combinatorics": "0.5.29",
"@types/jspdf": "^1.1.31",
"@types/jstree": "^3.3.35",
"@types/lodash": "4.14.104",
"@types/lolex": "1.5.31",
"@types/numeral": "0.0.22",
"@types/pako": "1.0.1",
"@types/pdfobject": "2.0.5",
"@types/qs": "^6.9.5",
"@types/raphael": "2.1.30",
"@types/rc-tooltip": "^3.7.3",
"@types/react": "^16.14.15",
"@types/react-bootstrap": "^0.32.15",
"@types/react-collapse": "^4.0.2",
"@types/react-color": "^3.0.4",
"@types/react-dom": "^16.8.2",
"@types/react-fontawesome": "1.5.0",
"@types/react-grid-layout": "^0.16.5",
"@types/react-helmet": "^6.1.0",
"@types/react-overlays": "^0.6.9",
"@types/react-router": "3.0.2",
"@types/react-router-dom": "^5.1.6",
"@types/react-select": "^5.0.1",
"@types/react-sortable-hoc": "^0.6.5",
"@types/react-spinkit": "^1.1.35",
"@types/react-table": "^6.8.7",
"@types/react-toastify": "^4.1.0",
"@types/react-transition-group": "^2.0.14",
"@types/react-virtualized": "^9.18.7",
"@types/recompose": "^0.20.4",
"@types/reselect": "^2.0.27",
"@types/route-parser": "0.0.0",
"@types/seamless-immutable": "^6.1.2",
"@types/seedrandom": "2.4.27",
"@types/sinon": "^4.1.3",
"@types/superagent": "^2.0.36",
"addthis-snippet": "^1.0.1",
"autobind-decorator": "^2.1.0",
"autoprefixer": "^6.7.0",
"babel-loader": "8.0.5",
"babel-plugin-transform-es2015-modules-umd": "^6.22.0",
"babel-polyfill": "^6.22.0",
"babel-register": "^6.22.0",
"better-react-spinkit": "^2.0.0-6",
"bind-decorator": "^1.0.11",
"bootstrap": "3.4.1",
"bootstrap-loader": "^1.2.0-beta.1",
"bootstrap-sass": "3.4.1",
"bowser": "^1.7.1",
"bundle-loader": "^0.5.4",
"cbioportal-clinical-timeline": "^0.3.88",
"cbioportal-frontend-commons": "^0.5.71",
"cbioportal-ts-api-client": "^0.9.74",
"cbioportal-utils": "^0.3.45",
"chart.js": "^2.6.0",
"classnames": "^2.2.5",
"clinical-timeline": "0.0.30",
"color-convert": "^2.0.1",
"contrast": "^1.0.1",
"copy-webpack-plugin": "^9.0.1",
"cross-env": "^3.1.4",
"css-loader": "^2.1.1",
"cssnano": "^3.10.0",
"d3": "3.5.6",
"d3-dsv": "1.0.8",
"d3-scale": "^2.0.0",
"d3-scale-chromatic": "^1.3.3",
"datatables.net": "^1.10.13",
"dotenv": "^4.0.0",
"enzyme": "^3.11.0",
"enzyme-adapter-react-16": "^1.12.1",
"enzyme-custom-wrappers": "^1.0.0",
"expired-storage": "^1.0.2",
"express": "^4.16.4",
"fast_array_intersect": "^1.1.0",
"file-loader": "^3.0.1",
"fixed-data-table": "^0.6.3",
"fmin": "^0.0.2",
"font-awesome": "^4.7.0",
"fork-ts-checker-webpack-plugin": "^6.3.3",
"genome-nexus-ts-api-client": "^1.1.35",
"git-revision-webpack-plugin": "^5.0.0",
"history": "4.10.1",
"html-webpack-plugin": "^5.3.2",
"igv": "^2.11.2",
"imports-loader": "^0.8.0",
"jStat": "^1.7.0",
"javascript-natural-sort": "^0.7.1",
"jquery": "3.6.0",
"jquery-migrate": "3.0.0",
"js-combinatorics": "^0.5.2",
"js-event-bus": "^1.1.1",
"json-fn": "^1.1.1",
"jsonpath": "^1.1.1",
"jspdf": "^1.3.3",
"jstree": "^3.3.4",
"jszip": "^3.7.1",
"lerna": "3.19.0",
"less": "^2.7.2",
"linear-algebra": "^3.1.4",
"little-loader": "^0.2.0",
"loader-utils": "^1.0.2",
"localforage": "^1.9.0",
"lodash": "^4.17.11",
"lolex": "^1.6.0",
"measure-text": "0.0.4",
"memoize-weak-decorator": "^1.0.3",
"mini-css-extract-plugin": "^0.12.0",
"mixpanel-browser": "^2.18.0",
"mobx": "^6.0.0",
"mobx-logger": "^0.7.1",
"mobx-react": "6.0.0",
"mobx-react-devtools": "6.1.1",
"mobx-react-lite": "3.0.1",
"mobx-react-router": "4.1.0",
"mobx-utils": "6.0.1",
"numeral": "^2.0.6",
"object-sizeof": "^1.2.0",
"oncokb-frontend-commons": "^0.0.29",
"oncokb-styles": "~1.4.2",
"oncokb-ts-api-client": "^1.3.7",
"oncoprintjs": "^6.0.6",
"pako": "2.0.2",
"parameter-validator": "^1.0.2",
"path-browserify": "^1.0.1",
"pathway-mapper": "^2.3.0",
"pdfobject": "^2.0.201604172",
"pegjs": "^0.10.0",
"plotly.js": "^1.42.5",
"pluralize": "^7.0.0",
"postcss-loader": "^1.2.2",
"postcss-url": "^8.0.0",
"precss": "^1.4.0",
"progress-bar-webpack-plugin": "^2.1.0",
"pushstate-server": "3.0.1",
"query-string": "^6.13.6",
"range-ts": "^0.1.5",
"raw-loader": "^0.5.1",
"rc-animate": "^3.1.1",
"rc-tooltip": "^5.0.2",
"rc-trigger": "^5.2.1",
"rc-util": "^5.8.0",
"react": "^16.4",
"react-addons-pure-render-mixin": "^15.4.2",
"react-addons-test-utils": "^15.4.2",
"react-bootstrap": "^0.31.5",
"react-bootstrap-slider": "^2.0.1",
"react-clipboard.js": "^1.0.1",
"react-collapse": "^4.0.3",
"react-color": "^2.18.1",
"react-column-resizer": "^1.1.9",
"react-dom": "^16.6",
"react-draggable": "^3.3.0",
"react-file-download": "^0.3.2",
"react-fontawesome": "^1.5.0",
"react-grid-layout": "^0.16.6",
"react-height": "^3.0.0",
"react-helmet": "^6.1.0",
"react-if": "^2.1.0",
"react-json-to-table": "^0.1.5",
"react-markdown": "^7.0.1",
"react-mfb": "^0.6.0",
"react-motion": "^0.4.7",
"react-mutation-mapper": "^0.8.115",
"react-overlays": "0.7.4",
"react-portal": "^4.2.0",
"react-rangeslider": "^2.1.0",
"react-renderif": "^1.0.2",
"react-resize-detector": "^0.5.0",
"react-reveal": "^1.2.2",
"react-router": "5.2.0",
"react-router-dom": "^5.2.0",
"react-select": "^3.0.4",
"react-select1": "npm:[email protected]",
"react-sortable-hoc": "^1.9.1",
"react-spinkit": "^3.0.0",
"react-text-truncate": "^0.9.0",
"react-toastify": "^9.1.2",
"react-tooltip": "^3.2.2",
"react-transition-group": "^2.5.1",
"react-virtualized": "^9.20.1",
"react-zeroclipboard": "^3.2.2",
"reactable": "^0.14.1",
"reactour": "^1.15.0",
"recompose": "^0.22.0",
"regression": "^2.0.1",
"rehype-raw": "^6.1.0",
"rehype-sanitize": "^5.0.0",
"remark-gfm": "^3.0.1",
"render-if": "^0.1.1",
"reselect": "^2.5.4",
"resolve-url-loader": "^1.6.1",
"responsive-fixed-data-table": "^2.0.0",
"rollup": "^2.73.0",
"rollup-plugin-node-externals": "^4.0.0",
"rollup-plugin-postcss": "^2.9.0",
"rollup-plugin-sourcemaps": "^0.6.3",
"rollup-plugin-typescript2": "^0.31.2",
"rollup-plugin-web-worker-loader": "^1.6.1",
"route-parser": "0.0.5",
"sass": "^1.32.4",
"sass-loader": "10.1.1",
"sass-resources-loader": "^1.3.1",
"save-svg-as-png": "^1.4.17",
"script-loader": "^0.7.0",
"seamless-immutable": "^7.0.1",
"seedrandom": "^2.4.3",
"shallowequal": "^1.1.0",
"snap": "^1.1.0",
"source-map-loader": "^0.1.6",
"style-loader": "^0.23.1",
"styled-components": "^4.2.1",
"superagent": "^3.8.3",
"superagent-cache": "^3.0.1",
"svg2pdf.js": "github:cbioportal/svg2pdf.js#v1.3.3-cbio-patch-1",
"svgsaver": "0.9.0",
"swagger-client": "^3.8.22",
"ts-loader": "4.0.0",
"tslib": "^1.11.1",
"typed-css-modules": "^0.6.4",
"typed-css-modules-webpack-plugin": "^0.2.0",
"typescript": "4.0.3",
"underscore": "^1.8.3",
"url": "^0.11.0",
"url-loader": "^1.1.2",
"venn.js": "^0.2.20",
"victory": "30.0.0",
"webpack": "^5.55.1",
"webpack-cli": "^4.8.0",
"webpack-raphael": "github:DmitryBaranovskiy/raphael#v2.3.0",
"word-wrap": "^1.2.3",
"xml2js": "^0.5.0"
},
"devDependencies": {
"@types/cheerio": "^0.22.23",
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},
"packageManager": "[email protected]"
}