Gidget should have a check config admin option, confirming requirements/external tools.

[spacepod]

Goal: verify that python, python libs, external tools such as annovar are all installed and/or available on the system, and that they are appropriate versions.

For example:

] gidget check-config

Sorry, you must be a site administrator for gidget to run this option.

] gidget --admin check config

Verifying current user is an admin for this gidget site installation.. ok
Reading configuration from /etc/gidget.conf:
testing python: 2.7 OK
testing python dependencies: ...
testing external tools: annovar, ...

gidget installation appears to be okay!