play_deploy_tools.yml

---
# Add all the tools that we need for the full pipeline. Order does matter
# here. It's a good plan to build common platforms like perl and python before you
# use them. And use the right ones. 
- hosts: grid-worker 
  vars_files:
    - 'vars/common.yml'
    - 'vars/external.yml'
    - 'vars/provisioning_platform_{{ provisioning_platform }}.yml'
  sudo: True
  roles:
    - { role: tools, selected_tool: 'r' }
    - { role: tools, selected_tool: 'perl' }
    - { role: tools, selected_tool: 'python27' }
    - { role: tools, selected_tool: 'bam2fastq' }
    - { role: tools, selected_tool: 'bfast' }
    - { role: tools, selected_tool: 'blat' }
    - { role: tools, selected_tool: 'bowtie2' }
    - { role: tools, selected_tool: 'idba' }
    - { role: tools, selected_tool: 'picard' }
    - { role: tools, selected_tool: 'sga' }
    - { role: tools, selected_tool: 'shrimp2' }
    - { role: tools, selected_tool: 'capsid' }
    - { role: tools, selected_tool: 'capsid_secure_components' }
    - { role: tools, selected_tool: 'phrap' }
    - { role: tools, selected_tool: 'trf' }
    - { role: tools, selected_tool: 'repeatmasker' }