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biolink-model.owl
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@prefix OIO: <http://www.geneontology.org/formats/oboInOwl#> .
@prefix dcterms: <http://purl.org/dc/terms/> .
@prefix meta: <https://w3id.org/biolink/biolinkml/meta/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix pav: <http://purl.org/pav/> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix skos: <http://www.w3.org/2004/02/skos/core#> .
@prefix xml: <http://www.w3.org/XML/1998/namespace> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
<https://w3id.org/biolink/biolink-model> a owl:Ontology ;
rdfs:label "biolink_model" ;
dcterms:license "https://creativecommons.org/publicdomain/zero/1.0/" ;
skos:definition "Entity and association taxonomy and datamodel for life-sciences data" ;
meta:generation_date "2019-09-19 08:32" ;
meta:metamodel_version "1.4.1" ;
meta:source_file "biolink-model.yaml" ;
meta:source_file_date "Thu Sep 19 08:29:27 2019" ;
meta:source_file_size 115622 .
meta:ActivityAndBehavior a owl:Class,
meta:ClassDefinition ;
rdfs:label "activity and behavior" ;
rdfs:subClassOf meta:Occurrent ;
skos:definition "Activity or behavior of any independent integral living, organization or mechanical actor in the world" .
meta:Carbohydrate a owl:Class,
meta:ClassDefinition ;
rdfs:label "carbohydrate" ;
rdfs:subClassOf meta:ChemicalSubstance .
meta:CaseToPhenotypicFeatureAssociation a owl:Class,
meta:ClassDefinition ;
rdfs:label "case to phenotypic feature association" ;
rdfs:subClassOf meta:Association,
meta:CaseToThingAssociation,
meta:EntityToPhenotypicFeatureAssociation ;
skos:definition "An association between a case (e.g. individual patient) and a phenotypic feature in which the individual has or has had the phenotype" .
meta:Cell a owl:Class,
meta:ClassDefinition ;
rdfs:label "cell" ;
rdfs:subClassOf meta:AnatomicalEntity .
meta:ClinicalIntervention a owl:Class,
meta:ClassDefinition ;
rdfs:label "clinical intervention" ;
rdfs:subClassOf meta:ClinicalEntity .
meta:ClinicalTrial a owl:Class,
meta:ClassDefinition ;
rdfs:label "clinical trial" ;
rdfs:subClassOf meta:ClinicalEntity .
meta:CodingSequence a owl:Class,
meta:ClassDefinition ;
rdfs:label "coding sequence" ;
rdfs:subClassOf meta:GenomicEntity .
meta:Device a owl:Class,
meta:ClassDefinition ;
rdfs:label "device" ;
rdfs:subClassOf meta:NamedThing ;
skos:definition "A thing made or adapted for a particular purpose, especially a piece of mechanical or electronic equipment" .
meta:DiseaseToPhenotypicFeatureAssociation a owl:Class,
meta:ClassDefinition ;
rdfs:label "disease to phenotypic feature association" ;
rdfs:subClassOf meta:Association,
meta:DiseaseToThingAssociation,
meta:EntityToPhenotypicFeatureAssociation ;
skos:definition "An association between a disease and a phenotypic feature in which the phenotypic feature is associated with the disease in some way" .
meta:Drug a owl:Class,
meta:ClassDefinition ;
rdfs:label "drug" ;
rdfs:subClassOf meta:ChemicalSubstance ;
skos:definition "A substance intended for use in the diagnosis, cure, mitigation, treatment, or prevention of disease" ;
skos:note "The CHEBI ID represents a role rather than a substance" .
meta:EnvironmentalFeature a owl:Class,
meta:ClassDefinition ;
rdfs:label "environmental feature" ;
rdfs:subClassOf meta:PlanetaryEntity .
meta:EnvironmentalProcess a owl:Class,
meta:ClassDefinition ;
rdfs:label "environmental process" ;
rdfs:subClassOf [ a owl:Restriction ;
owl:allValuesFrom meta:Occurrent ;
owl:onProperty meta:regulates_process_to_process ],
[ a owl:Restriction ;
owl:allValuesFrom meta:NamedThing ;
owl:onProperty meta:has_participant ],
[ a owl:Restriction ;
owl:allValuesFrom meta:Occurrent ;
owl:onProperty meta:precedes ],
[ a owl:Restriction ;
owl:allValuesFrom meta:NamedThing ;
owl:onProperty meta:has_input ],
[ a owl:Restriction ;
owl:allValuesFrom meta:NamedThing ;
owl:onProperty meta:has_output ],
[ a owl:Restriction ;
owl:allValuesFrom meta:Occurrent ;
owl:onProperty meta:precedes ],
meta:Occurrent,
meta:PlanetaryEntity .
meta:GeneFamily a owl:Class,
meta:ClassDefinition ;
rdfs:label "gene family" ;
rdfs:subClassOf meta:GeneGrouping,
meta:MolecularEntity ;
skos:definition "any grouping of multiple genes or gene products related by common descent" .
meta:Genome a owl:Class,
meta:ClassDefinition ;
rdfs:label "genome" ;
rdfs:subClassOf meta:GenomicEntity ;
skos:definition "A genome is the sum of genetic material within a cell or virion." .
meta:GenotypicSex a owl:Class,
meta:ClassDefinition ;
rdfs:label "genotypic sex" ;
rdfs:subClassOf meta:BiologicalSex ;
skos:definition "An attribute corresponding to the genotypic sex of the individual, based upon genotypic composition of sex chromosomes." .
meta:GeographicLocationAtTime a owl:Class,
meta:ClassDefinition ;
rdfs:label "geographic location at time" ;
rdfs:subClassOf meta:GeographicLocation ;
skos:definition "a location that can be described in lat/long coordinates, for a particular time" .
meta:GrossAnatomicalStructure a owl:Class,
meta:ClassDefinition ;
rdfs:label "gross anatomical structure" ;
rdfs:subClassOf meta:AnatomicalEntity .
meta:Haplotype a owl:Class,
meta:ClassDefinition ;
rdfs:label "haplotype" ;
rdfs:subClassOf meta:GenomicEntity ;
skos:definition "A set of zero or more Alleles on a single instance of a Sequence[VMC]" .
meta:MacromolecularComplex a owl:Class,
meta:ClassDefinition ;
rdfs:label "macromolecular complex" ;
rdfs:subClassOf meta:MacromolecularMachine .
meta:MaterialSampleToDiseaseOrPhenotypicFeatureAssociation a owl:Class,
meta:ClassDefinition ;
rdfs:label "material sample to disease or phenotypic feature association" ;
rdfs:subClassOf meta:Association,
meta:MaterialSampleToThingAssociation,
meta:ThingToDiseaseOrPhenotypicFeatureAssociation ;
skos:definition "An association between a material sample and a disease or phenotype" .
meta:Metabolite a owl:Class,
meta:ClassDefinition ;
rdfs:label "metabolite" ;
rdfs:subClassOf meta:ChemicalSubstance ;
skos:definition "Any intermediate or product resulting from metabolism. Includes primary and secondary metabolites." ;
skos:note "The CHEBI ID represents a role rather than a substance" .
meta:MicroRNA a owl:Class,
meta:ClassDefinition ;
rdfs:label "microRNA" ;
rdfs:subClassOf meta:NoncodingRNAProduct .
meta:PathognomonicityQuantifier a owl:Class,
meta:ClassDefinition ;
rdfs:label "pathognomonicity quantifier" ;
rdfs:subClassOf meta:SpecificityQuantifier,
meta:mixin ;
skos:definition "A relationship quantifier between a variant or symptom and a disease, which is high when the presence of the feature implies the existence of the disease" .
meta:Phenomenon a owl:Class,
meta:ClassDefinition ;
rdfs:label "phenomenon" ;
rdfs:subClassOf meta:Occurrent ;
skos:definition "a fact or situation that is observed to exist or happen, especially one whose cause or explanation is in question" .
meta:PhenotypicSex a owl:Class,
meta:ClassDefinition ;
rdfs:label "phenotypic sex" ;
rdfs:subClassOf meta:BiologicalSex ;
skos:definition "An attribute corresponding to the phenotypic sex of the individual, based upon the reproductive organs present." .
meta:PhysiologicalProcess a owl:Class,
meta:ClassDefinition ;
rdfs:label "physiological process" ;
rdfs:subClassOf meta:BiologicalProcess .
meta:Procedure a owl:Class,
meta:ClassDefinition ;
rdfs:label "procedure" ;
rdfs:subClassOf meta:Occurrent ;
skos:definition "A series of actions conducted in a certain order or manner" .
meta:ProteinIsoform a owl:Class,
meta:ClassDefinition ;
rdfs:label "protein isoform" ;
rdfs:subClassOf meta:GeneProductIsoform,
meta:Protein ;
skos:definition "Represents a protein that is a specific isoform of the canonical or reference protein. See https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4114032/" .
meta:RNAProductIsoform a owl:Class,
meta:ClassDefinition ;
rdfs:label "RNA product isoform" ;
rdfs:subClassOf meta:GeneProductIsoform,
meta:RNAProduct ;
skos:definition "Represents a protein that is a specific isoform of the canonical or reference RNA" .
meta:RelationshipType a owl:Class,
meta:ClassDefinition ;
rdfs:label "relationship type" ;
rdfs:subClassOf meta:OntologyClass ;
skos:definition "An OWL property used as an edge label" .
meta:SensitivityQuantifier a owl:Class,
meta:ClassDefinition ;
rdfs:label "sensitivity quantifier" ;
rdfs:subClassOf meta:RelationshipQuantifier,
meta:mixin .
meta:SubsetDefinition a owl:Class ;
rdfs:label "subset_definition" ;
skos:definition "the name and description of a subset" .
meta:anatomical_entity_to_anatomical_entity_ontogenic_association_object a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "anatomical entity to anatomical entity ontogenic association_object" ;
rdfs:domain meta:AnatomicalEntityToAnatomicalEntityOntogenicAssociation ;
rdfs:range meta:AnatomicalEntity ;
rdfs:subPropertyOf meta:anatomical_entity_to_anatomical_entity_association_object .
meta:anatomical_entity_to_anatomical_entity_ontogenic_association_relation a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "anatomical entity to anatomical entity ontogenic association_relation" ;
rdfs:domain meta:AnatomicalEntityToAnatomicalEntityOntogenicAssociation ;
rdfs:range meta:uriorcurie ;
rdfs:subPropertyOf meta:relation .
meta:anatomical_entity_to_anatomical_entity_ontogenic_association_subject a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "anatomical entity to anatomical entity ontogenic association_subject" ;
rdfs:domain meta:AnatomicalEntityToAnatomicalEntityOntogenicAssociation ;
rdfs:range meta:AnatomicalEntity ;
rdfs:subPropertyOf meta:anatomical_entity_to_anatomical_entity_association_subject .
meta:anatomical_entity_to_anatomical_entity_part_of_association_object a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "anatomical entity to anatomical entity part of association_object" ;
rdfs:domain meta:AnatomicalEntityToAnatomicalEntityPartOfAssociation ;
rdfs:range meta:AnatomicalEntity ;
rdfs:subPropertyOf meta:anatomical_entity_to_anatomical_entity_association_object .
meta:anatomical_entity_to_anatomical_entity_part_of_association_relation a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "anatomical entity to anatomical entity part of association_relation" ;
rdfs:domain meta:AnatomicalEntityToAnatomicalEntityPartOfAssociation ;
rdfs:range meta:uriorcurie ;
rdfs:subPropertyOf meta:relation .
meta:anatomical_entity_to_anatomical_entity_part_of_association_subject a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "anatomical entity to anatomical entity part of association_subject" ;
rdfs:domain meta:AnatomicalEntityToAnatomicalEntityPartOfAssociation ;
rdfs:range meta:AnatomicalEntity ;
rdfs:subPropertyOf meta:anatomical_entity_to_anatomical_entity_association_subject .
meta:association_type a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "association type" ;
rdfs:domain meta:Association ;
rdfs:range meta:OntologyClass ;
rdfs:subPropertyOf meta:association_slot ;
skos:definition "connects an association to the type of association (e.g. gene to phenotype)" .
meta:case_to_thing_association_subject a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "case to thing association_subject" ;
rdfs:domain meta:CaseToThingAssociation ;
rdfs:range meta:Case ;
rdfs:subPropertyOf meta:subject .
meta:category a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "category" ;
rdfs:domain meta:NamedThing ;
rdfs:range meta:iri_type ;
rdfs:subPropertyOf meta:node_property ;
skos:definition "Name of the high level ontology class in which this entity is categorized. Corresponds to the label for the biolink entity type class. In a neo4j database this MAY correspond to the neo4j label tag" .
meta:cell_line_to_disease_or_phenotypic_feature_association_subject a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "cell line to disease or phenotypic feature association_subject" ;
rdfs:domain meta:CellLineToDiseaseOrPhenotypicFeatureAssociation ;
rdfs:range meta:DiseaseOrPhenotypicFeature ;
rdfs:subPropertyOf meta:subject .
meta:cell_line_to_thing_association_subject a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "cell line to thing association_subject" ;
rdfs:domain meta:CellLineToThingAssociation ;
rdfs:range meta:CellLine ;
rdfs:subPropertyOf meta:subject .
meta:chemical_to_chemical_derivation_association_change_is_catalyzed_by a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "chemical to chemical derivation association_change is catalyzed by" ;
rdfs:domain meta:ChemicalToChemicalDerivationAssociation ;
rdfs:range meta:MacromolecularMachine ;
rdfs:subPropertyOf meta:change_is_catalyzed_by .
meta:chemical_to_chemical_derivation_association_object a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "chemical to chemical derivation association_object" ;
rdfs:domain meta:ChemicalToChemicalDerivationAssociation ;
rdfs:range meta:ChemicalSubstance ;
rdfs:subPropertyOf meta:chemical_to_chemical_association_object .
meta:chemical_to_chemical_derivation_association_relation a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "chemical to chemical derivation association_relation" ;
rdfs:domain meta:ChemicalToChemicalDerivationAssociation ;
rdfs:range meta:uriorcurie ;
rdfs:subPropertyOf meta:relation .
meta:chemical_to_chemical_derivation_association_subject a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "chemical to chemical derivation association_subject" ;
rdfs:domain meta:ChemicalToChemicalDerivationAssociation ;
rdfs:range meta:ChemicalSubstance ;
rdfs:subPropertyOf meta:subject .
meta:chemical_to_disease_or_phenotypic_feature_association_object a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "chemical to disease or phenotypic feature association_object" ;
rdfs:domain meta:ChemicalToDiseaseOrPhenotypicFeatureAssociation ;
rdfs:range meta:DiseaseOrPhenotypicFeature ;
rdfs:subPropertyOf meta:object .
meta:chemical_to_gene_association_object a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "chemical to gene association_object" ;
rdfs:domain meta:ChemicalToGeneAssociation ;
rdfs:range meta:GeneOrGeneProduct ;
rdfs:subPropertyOf meta:object .
meta:chemical_to_pathway_association_object a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "chemical to pathway association_object" ;
rdfs:domain meta:ChemicalToPathwayAssociation ;
rdfs:range meta:Pathway ;
rdfs:subPropertyOf meta:object .
meta:chemical_to_thing_association_subject a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "chemical to thing association_subject" ;
rdfs:domain meta:ChemicalToThingAssociation ;
rdfs:range meta:ChemicalSubstance ;
rdfs:subPropertyOf meta:subject .
meta:clinical_modifier_qualifier a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "clinical modifier qualifier" ;
rdfs:domain meta:Association ;
rdfs:range meta:ClinicalModifier ;
rdfs:subPropertyOf meta:association_slot ;
skos:definition "Used to characterize and specify the phenotypic abnormalities defined in the Phenotypic abnormality subontology, with respect to severity, laterality, age of onset, and other aspects" .
meta:creation_date a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "creation date" ;
rdfs:domain meta:NamedThing ;
rdfs:range meta:date ;
rdfs:subPropertyOf meta:node_property ;
skos:definition "date on which thing was created. This can be applied to nodes or edges" .
meta:datetime a owl:Class,
meta:TypeDefinition ;
rdfs:label "datetime" ;
rdfs:subClassOf [ a owl:Restriction ;
owl:onDataRange xsd:dateTime ;
owl:onProperty meta:topValue ;
owl:qualifiedCardinality 1 ] ;
skos:definition "The combination of a date and time" .
meta:disease_or_phenotypic_feature_association_to_location_association_object a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "disease or phenotypic feature association to location association_object" ;
rdfs:domain meta:DiseaseOrPhenotypicFeatureAssociationToLocationAssociation ;
rdfs:range meta:AnatomicalEntity ;
rdfs:subPropertyOf meta:object .
meta:disease_or_phenotypic_feature_association_to_thing_association_subject a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "disease or phenotypic feature association to thing association_subject" ;
rdfs:domain meta:DiseaseOrPhenotypicFeatureAssociationToThingAssociation ;
rdfs:range meta:DiseaseOrPhenotypicFeature ;
rdfs:subPropertyOf meta:subject .
meta:disease_to_thing_association_subject a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "disease to thing association_subject" ;
rdfs:domain meta:DiseaseToThingAssociation ;
rdfs:range meta:Disease ;
rdfs:subPropertyOf meta:subject .
meta:distribution a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "distribution" ;
rdfs:domain meta:DataSetVersion ;
rdfs:range meta:DistributionLevel ;
rdfs:subPropertyOf meta:node_property .
meta:downloadURL a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "downloadURL" ;
rdfs:domain meta:DistributionLevel ;
rdfs:range meta:string ;
rdfs:subPropertyOf meta:node_property .
meta:drug a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "drug" ;
rdfs:domain meta:DrugExposure ;
rdfs:range meta:ChemicalSubstance .
meta:edge_label a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "edge label" ;
rdfs:domain meta:Association ;
rdfs:range meta:label_type ;
rdfs:subPropertyOf meta:association_slot ;
skos:definition "A high-level grouping for the relationship type. AKA minimal predicate. This is analogous to category for nodes." ;
skos:editorialNote "in neo4j this corresponds to the relationship type and the convention is for a snake_case label" .
meta:end_interbase_coordinate a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "end interbase coordinate" ;
rdfs:domain meta:NamedThing ;
rdfs:range meta:string ;
rdfs:subPropertyOf meta:interbase_coordinate .
meta:entity_to_disease_association_object a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "entity to disease association_object" ;
rdfs:domain meta:EntityToDiseaseAssociation ;
rdfs:range meta:Disease ;
rdfs:subPropertyOf meta:object .
meta:entity_to_phenotypic_feature_association_description a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "entity to phenotypic feature association_description" ;
rdfs:domain meta:EntityToPhenotypicFeatureAssociation ;
rdfs:range meta:narrative_text ;
rdfs:subPropertyOf meta:description .
meta:entity_to_phenotypic_feature_association_object a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "entity to phenotypic feature association_object" ;
rdfs:domain meta:EntityToPhenotypicFeatureAssociation ;
rdfs:range meta:PhenotypicFeature ;
rdfs:subPropertyOf meta:object .
meta:environment_to_phenotypic_feature_association_subject a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "environment to phenotypic feature association_subject" ;
rdfs:domain meta:EnvironmentToPhenotypicFeatureAssociation ;
rdfs:range meta:Environment ;
rdfs:subPropertyOf meta:subject .
meta:exon_to_transcript_relationship_object a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "exon to transcript relationship_object" ;
rdfs:domain meta:ExonToTranscriptRelationship ;
rdfs:range meta:Transcript ;
rdfs:subPropertyOf meta:sequence_feature_relationship_object .
meta:exon_to_transcript_relationship_subject a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "exon to transcript relationship_subject" ;
rdfs:domain meta:ExonToTranscriptRelationship ;
rdfs:range meta:Exon ;
rdfs:subPropertyOf meta:sequence_feature_relationship_subject .
meta:filler a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "filler" ;
rdfs:domain meta:NamedThing ;
rdfs:range meta:NamedThing ;
rdfs:subPropertyOf meta:node_property ;
skos:definition "The value in a property-value tuple" .
meta:frequency a owl:Class,
meta:TypeDefinition ;
rdfs:label "frequency" ;
rdfs:subClassOf meta:string .
meta:frequency_qualifier a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "frequency qualifier" ;
rdfs:domain meta:Association ;
rdfs:range meta:FrequencyValue ;
rdfs:subPropertyOf meta:association_slot ;
skos:definition "a qualifier used in a phenotypic association to state how frequent the phenotype is observed in the subject" .
meta:full_name a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "full name" ;
rdfs:domain meta:NamedThing ;
rdfs:range meta:label_type ;
rdfs:subPropertyOf meta:node_property ;
skos:definition "a long-form human readable name for a thing" .
meta:gene_as_a_model_of_disease_association_subject a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "gene as a model of disease association_subject" ;
rdfs:domain meta:GeneAsAModelOfDiseaseAssociation ;
rdfs:range meta:GeneOrGeneProduct ;
rdfs:subPropertyOf meta:gene_to_disease_association_subject .
meta:gene_has_variant_that_contributes_to_disease_association_subject a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "gene has variant that contributes to disease association_subject" ;
rdfs:domain meta:GeneHasVariantThatContributesToDiseaseAssociation ;
rdfs:range meta:GeneOrGeneProduct ;
rdfs:subPropertyOf meta:gene_to_disease_association_subject .
meta:gene_regulatory_relationship_object a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "gene regulatory relationship_object" ;
rdfs:domain meta:GeneRegulatoryRelationship ;
rdfs:range meta:GeneOrGeneProduct ;
rdfs:subPropertyOf meta:object .
meta:gene_regulatory_relationship_relation a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "gene regulatory relationship_relation" ;
rdfs:domain meta:GeneRegulatoryRelationship ;
rdfs:range meta:uriorcurie ;
rdfs:subPropertyOf meta:relation .
meta:gene_regulatory_relationship_subject a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "gene regulatory relationship_subject" ;
rdfs:domain meta:GeneRegulatoryRelationship ;
rdfs:range meta:GeneOrGeneProduct ;
rdfs:subPropertyOf meta:subject .
meta:gene_to_expression_site_association_object a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "gene to expression site association_object" ;
rdfs:domain meta:GeneToExpressionSiteAssociation ;
rdfs:range meta:AnatomicalEntity ;
rdfs:subPropertyOf meta:object .
meta:gene_to_expression_site_association_quantifier_qualifier a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "gene to expression site association_quantifier qualifier" ;
rdfs:domain meta:GeneToExpressionSiteAssociation ;
rdfs:range meta:OntologyClass ;
rdfs:subPropertyOf meta:quantifier_qualifier .
meta:gene_to_expression_site_association_relation a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "gene to expression site association_relation" ;
rdfs:domain meta:GeneToExpressionSiteAssociation ;
rdfs:range meta:uriorcurie ;
rdfs:subPropertyOf meta:relation .
meta:gene_to_expression_site_association_stage_qualifier a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "gene to expression site association_stage qualifier" ;
rdfs:domain meta:GeneToExpressionSiteAssociation ;
rdfs:range meta:LifeStage ;
rdfs:subPropertyOf meta:stage_qualifier .
meta:gene_to_expression_site_association_subject a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "gene to expression site association_subject" ;
rdfs:domain meta:GeneToExpressionSiteAssociation ;
rdfs:range meta:GeneOrGeneProduct ;
rdfs:subPropertyOf meta:subject .
meta:gene_to_gene_association_object a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "gene to gene association_object" ;
rdfs:domain meta:GeneToGeneAssociation ;
rdfs:range meta:GeneOrGeneProduct ;
rdfs:subPropertyOf meta:object .
meta:gene_to_gene_association_subject a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "gene to gene association_subject" ;
rdfs:domain meta:GeneToGeneAssociation ;
rdfs:range meta:GeneOrGeneProduct ;
rdfs:subPropertyOf meta:subject .
meta:gene_to_gene_homology_association_relation a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "gene to gene homology association_relation" ;
rdfs:domain meta:GeneToGeneHomologyAssociation ;
rdfs:range meta:uriorcurie ;
rdfs:subPropertyOf meta:relation .
meta:gene_to_gene_product_relationship_object a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "gene to gene product relationship_object" ;
rdfs:domain meta:GeneToGeneProductRelationship ;
rdfs:range meta:GeneProduct ;
rdfs:subPropertyOf meta:sequence_feature_relationship_object .
meta:gene_to_gene_product_relationship_relation a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "gene to gene product relationship_relation" ;
rdfs:domain meta:GeneToGeneProductRelationship ;
rdfs:range meta:uriorcurie ;
rdfs:subPropertyOf meta:relation .
meta:gene_to_gene_product_relationship_subject a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "gene to gene product relationship_subject" ;
rdfs:domain meta:GeneToGeneProductRelationship ;
rdfs:range meta:Gene ;
rdfs:subPropertyOf meta:sequence_feature_relationship_subject .
meta:gene_to_go_term_association_object a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "gene to go term association_object" ;
rdfs:domain meta:GeneToGoTermAssociation ;
rdfs:range meta:GeneOntologyClass ;
rdfs:subPropertyOf meta:functional_association_object .
meta:gene_to_go_term_association_subject a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "gene to go term association_subject" ;
rdfs:domain meta:GeneToGoTermAssociation ;
rdfs:range meta:MolecularEntity ;
rdfs:subPropertyOf meta:functional_association_subject .
meta:gene_to_phenotypic_feature_association_subject a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "gene to phenotypic feature association_subject" ;
rdfs:domain meta:GeneToPhenotypicFeatureAssociation ;
rdfs:range meta:GeneOrGeneProduct ;
rdfs:subPropertyOf meta:subject .
meta:gene_to_thing_association_subject a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "gene to thing association_subject" ;
rdfs:domain meta:GeneToThingAssociation ;
rdfs:range meta:GeneOrGeneProduct ;
rdfs:subPropertyOf meta:subject .
meta:genome_build a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "genome build" ;
rdfs:domain meta:NamedThing ;
rdfs:range meta:string ;
rdfs:subPropertyOf meta:node_property ;
skos:definition "TODO" .
meta:genomic_sequence_localization_object a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "genomic sequence localization_object" ;
rdfs:domain meta:GenomicSequenceLocalization ;
rdfs:range meta:GenomicEntity ;
rdfs:subPropertyOf meta:object .
meta:genomic_sequence_localization_subject a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "genomic sequence localization_subject" ;
rdfs:domain meta:GenomicSequenceLocalization ;
rdfs:range meta:GenomicEntity ;
rdfs:subPropertyOf meta:subject .
meta:genotype_to_gene_association_object a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "genotype to gene association_object" ;
rdfs:domain meta:GenotypeToGeneAssociation ;
rdfs:range meta:Gene ;
rdfs:subPropertyOf meta:object .
meta:genotype_to_gene_association_relation a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "genotype to gene association_relation" ;
rdfs:domain meta:GenotypeToGeneAssociation ;
rdfs:range meta:uriorcurie ;
rdfs:subPropertyOf meta:relation .
meta:genotype_to_gene_association_subject a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "genotype to gene association_subject" ;
rdfs:domain meta:GenotypeToGeneAssociation ;
rdfs:range meta:Genotype ;
rdfs:subPropertyOf meta:subject .
meta:genotype_to_genotype_part_association_object a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "genotype to genotype part association_object" ;
rdfs:domain meta:GenotypeToGenotypePartAssociation ;
rdfs:range meta:Genotype ;
rdfs:subPropertyOf meta:object .
meta:genotype_to_genotype_part_association_relation a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "genotype to genotype part association_relation" ;
rdfs:domain meta:GenotypeToGenotypePartAssociation ;
rdfs:range meta:uriorcurie ;
rdfs:subPropertyOf meta:relation .
meta:genotype_to_genotype_part_association_subject a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "genotype to genotype part association_subject" ;
rdfs:domain meta:GenotypeToGenotypePartAssociation ;
rdfs:range meta:Genotype ;
rdfs:subPropertyOf meta:subject .
meta:genotype_to_phenotypic_feature_association_relation a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "genotype to phenotypic feature association_relation" ;
rdfs:domain meta:GenotypeToPhenotypicFeatureAssociation ;
rdfs:range meta:uriorcurie ;
rdfs:subPropertyOf meta:relation .
meta:genotype_to_phenotypic_feature_association_subject a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "genotype to phenotypic feature association_subject" ;
rdfs:domain meta:GenotypeToPhenotypicFeatureAssociation ;
rdfs:range meta:Genotype ;
rdfs:subPropertyOf meta:subject .
meta:genotype_to_thing_association_subject a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "genotype to thing association_subject" ;
rdfs:domain meta:GenotypeToThingAssociation ;
rdfs:range meta:Genotype ;
rdfs:subPropertyOf meta:subject .
meta:genotype_to_variant_association_object a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "genotype to variant association_object" ;
rdfs:domain meta:GenotypeToVariantAssociation ;
rdfs:range meta:SequenceVariant ;
rdfs:subPropertyOf meta:object .
meta:genotype_to_variant_association_relation a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "genotype to variant association_relation" ;
rdfs:domain meta:GenotypeToVariantAssociation ;
rdfs:range meta:uriorcurie ;
rdfs:subPropertyOf meta:relation .
meta:genotype_to_variant_association_subject a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "genotype to variant association_subject" ;
rdfs:domain meta:GenotypeToVariantAssociation ;
rdfs:range meta:Genotype ;
rdfs:subPropertyOf meta:subject .
meta:has_attribute a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "has attribute" ;
rdfs:range meta:Attribute ;
skos:definition "connects any named thing to an attribute" .
meta:has_attribute_type a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "has attribute type" ;
rdfs:domain meta:Attribute ;
rdfs:range meta:OntologyClass ;
skos:definition "connects an attribute to a class that describes it" .
meta:has_chemical_formula a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "has chemical formula" ;
rdfs:domain meta:NamedThing ;
rdfs:range meta:chemical_formula_value ;
rdfs:subPropertyOf meta:node_property ;
skos:definition "description of chemical compound based on element symbols" .
meta:has_confidence_level a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "has confidence level" ;
rdfs:domain meta:Association ;
rdfs:range meta:ConfidenceLevel ;
rdfs:subPropertyOf meta:association_slot ;
skos:definition "connects an association to a qualitative term denoting the level of confidence" .
meta:has_evidence a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "has evidence" ;
rdfs:domain meta:Association ;
rdfs:range meta:EvidenceType ;
rdfs:subPropertyOf meta:association_slot ;
skos:definition "connects an association to an instance of supporting evidence" .
meta:has_exposure_parts a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "has exposure parts" ;
rdfs:domain meta:Treatment ;
rdfs:range meta:DrugExposure .
meta:has_numeric_value a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "has numeric value" ;
rdfs:domain meta:QuantityValue ;
rdfs:range meta:double ;
skos:definition "connects a quantity value to a number" .
meta:has_percentage a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "has percentage" ;
rdfs:domain meta:NamedThing ;
rdfs:range meta:double ;
rdfs:subPropertyOf meta:aggregate_statistic ;
skos:definition "equivalent to has quotient multiplied by 100" .
meta:has_qualitative_value a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "has qualitative value" ;
rdfs:domain meta:Attribute ;
rdfs:range meta:NamedThing ;
skos:definition "connects an attribute to a value" .
meta:has_quantitative_value a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "has quantitative value" ;
rdfs:domain meta:Attribute ;
rdfs:range meta:QuantityValue ;
skos:definition "connects an attribute to a value" .
meta:has_unit a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "has unit" ;
rdfs:domain meta:QuantityValue ;
rdfs:range meta:unit ;
skos:definition "connects a quantity value to a unit" .
meta:has_zygosity a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "has zygosity" ;
rdfs:domain meta:NamedThing ;
rdfs:range meta:Zygosity ;
rdfs:subPropertyOf meta:node_property .
meta:interacting_molecules_category a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "interacting molecules category" ;
rdfs:domain meta:PairwiseInteractionAssociation ;
rdfs:range meta:OntologyClass .
meta:iri a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "iri" ;
rdfs:domain meta:NamedThing ;
rdfs:range meta:iri_type ;
rdfs:subPropertyOf meta:node_property ;
skos:definition "An IRI for the node. This is determined by the id using expansion rules." .
meta:latitude a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "latitude" ;
rdfs:domain meta:NamedThing ;
rdfs:range meta:float ;
rdfs:subPropertyOf meta:node_property ;
skos:definition "latitude" .
meta:longitude a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "longitude" ;
rdfs:domain meta:NamedThing ;
rdfs:range meta:float ;
rdfs:subPropertyOf meta:node_property ;
skos:definition "longitude" .
meta:macromolecular_machine_name a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "macromolecular machine_name" ;
rdfs:domain meta:MacromolecularMachine ;
rdfs:range meta:symbol_type ;
rdfs:subPropertyOf meta:name .
meta:macromolecular_machine_to_biological_process_association_object a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "macromolecular machine to biological process association_object" ;
rdfs:domain meta:MacromolecularMachineToBiologicalProcessAssociation ;
rdfs:range meta:BiologicalProcess ;
rdfs:subPropertyOf meta:functional_association_object .
meta:macromolecular_machine_to_cellular_component_association_object a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "macromolecular machine to cellular component association_object" ;
rdfs:domain meta:MacromolecularMachineToCellularComponentAssociation ;
rdfs:range meta:CellularComponent ;
rdfs:subPropertyOf meta:functional_association_object .
meta:macromolecular_machine_to_molecular_activity_association_object a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "macromolecular machine to molecular activity association_object" ;
rdfs:domain meta:MacromolecularMachineToMolecularActivityAssociation ;
rdfs:range meta:MolecularActivity ;
rdfs:subPropertyOf meta:functional_association_object .
meta:material_sample_derivation_association_object a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "material sample derivation association_object" ;
rdfs:domain meta:MaterialSampleDerivationAssociation ;
rdfs:range meta:NamedThing ;
rdfs:subPropertyOf meta:object .
meta:material_sample_derivation_association_relation a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "material sample derivation association_relation" ;
rdfs:domain meta:MaterialSampleDerivationAssociation ;
rdfs:range meta:uriorcurie ;
rdfs:subPropertyOf meta:relation .
meta:material_sample_derivation_association_subject a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "material sample derivation association_subject" ;
rdfs:domain meta:MaterialSampleDerivationAssociation ;
rdfs:range meta:MaterialSample ;
rdfs:subPropertyOf meta:subject .
meta:material_sample_to_thing_association_subject a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "material sample to thing association_subject" ;
rdfs:domain meta:MaterialSampleToThingAssociation ;
rdfs:range meta:MaterialSample ;
rdfs:subPropertyOf meta:subject .
meta:model_to_disease_mixin_relation a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "model to disease mixin_relation" ;
rdfs:domain meta:ModelToDiseaseMixin ;
rdfs:range meta:uriorcurie ;
rdfs:subPropertyOf meta:relation .
meta:model_to_disease_mixin_subject a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "model to disease mixin_subject" ;
rdfs:domain meta:ModelToDiseaseMixin ;
rdfs:range meta:NamedThing ;
rdfs:subPropertyOf meta:subject .
meta:molecular_activity_enabled_by a owl:ObjectProperty,
meta:SlotDefinition ;
rdfs:label "molecular activity_enabled by" ;
rdfs:domain meta:MolecularActivity ;
rdfs:range meta:MacromolecularMachine ;
rdfs:subPropertyOf meta:enabled_by .
meta:molecular_activity_has_input a owl:ObjectProperty,
meta:SlotDefinition ;
rdfs:label "molecular activity_has input" ;
rdfs:domain meta:MolecularActivity ;
rdfs:range meta:ChemicalSubstance ;
rdfs:subPropertyOf meta:has_input .
meta:molecular_activity_has_output a owl:ObjectProperty,
meta:SlotDefinition ;
rdfs:label "molecular activity_has output" ;
rdfs:domain meta:MolecularActivity ;
rdfs:range meta:ChemicalSubstance ;
rdfs:subPropertyOf meta:has_output .
meta:ncname a owl:Class,
meta:TypeDefinition ;
rdfs:label "ncname" ;
rdfs:subClassOf [ a owl:Restriction ;
owl:onDataRange xsd:string ;
owl:onProperty meta:topValue ;
owl:qualifiedCardinality 1 ] ;
skos:definition "Prefix part of CURIE" .
meta:negated a owl:AnnotationProperty,
meta:SlotDefinition ;
rdfs:label "negated" ;
rdfs:domain meta:Association ;
rdfs:range meta:boolean ;
rdfs:subPropertyOf meta:association_slot ;
skos:definition "if set to true, then the association is negated i.e. is not true" .
meta:objectidentifier a owl:Class,
meta:TypeDefinition ;
rdfs:label "objectidentifier" ;
rdfs:subClassOf [ a owl:Restriction ;
owl:onDataRange <http://www.w3.org/ns/shex#iri> ;
owl:onProperty meta:topValue ;
owl:qualifiedCardinality 1 ] ;
skos:definition "A URI or CURIE that represents an object in the model." ;
skos:note "Used for inheritence and type checking" .
meta:onset_qualifier a owl:AnnotationProperty,