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contextn.jsonld
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{
"_comments": "Auto generated from biolink-model.yaml by jsonldcontextgen.py version: 0.1.1\nGeneration date: 2019-09-19 08:32\nSchema: biolink_model\n\nid: https://w3id.org/biolink/biolink-model\ndescription: Entity and association taxonomy and datamodel for life-sciences data\nlicense: https://creativecommons.org/publicdomain/zero/1.0/\n",
"@context": {
"_comments": null,
"type": "@type",
"BFO": "http://purl.obolibrary.org/obo/BFO_",
"BIOGRID": "http://thebiogrid.org/",
"BioSample": "http://example.org/UNKNOWN/BioSample/",
"CHEBI": "http://purl.obolibrary.org/obo/CHEBI_",
"CHEMBL.COMPOUND": "http://identifiers.org/chembl.compound/",
"CHEMBL.TARGET": "http://identifiers.org/chembl.target/",
"CIO": "http://purl.obolibrary.org/obo/CIO_",
"CIViC": "http://example.org/UNKNOWN/CIViC/",
"CL": "http://purl.obolibrary.org/obo/CL_",
"CLO": "http://purl.obolibrary.org/obo/CLO_",
"ClinVar": "http://www.ncbi.nlm.nih.gov/clinvar/",
"ECO": "http://purl.obolibrary.org/obo/ECO_",
"ECTO": "http://example.org/UNKNOWN/ECTO/",
"EFO": "http://purl.obolibrary.org/obo/EFO_",
"ENSEMBL": "http://ensembl.org/id/",
"FAO": "http://purl.obolibrary.org/obo/FAO_",
"GENO": "http://purl.obolibrary.org/obo/GENO_",
"GO": "http://purl.obolibrary.org/obo/GO_",
"GOLD.META": "http://identifiers.org/gold.meta/",
"HANCESTRO": "http://example.org/UNKNOWN/HANCESTRO/",
"HGNC": "http://www.genenames.org/cgi-bin/gene_symbol_report?hgnc_id=",
"HP": "http://purl.obolibrary.org/obo/HP_",
"IAO": "http://purl.obolibrary.org/obo/IAO_",
"IntAct": "http://example.org/UNKNOWN/IntAct/",
"MGI": "http://www.informatics.jax.org/accession/MGI:",
"MIR": "http://identifiers.org/mir/",
"MONDO": "http://purl.obolibrary.org/obo/MONDO_",
"NCBIGene": "http://www.ncbi.nlm.nih.gov/gene/",
"NCIT": "http://purl.obolibrary.org/obo/NCIT_",
"OBAN": "http://purl.org/oban/",
"OBI": "http://purl.obolibrary.org/obo/OBI_",
"OGMS": "http://purl.obolibrary.org/obo/OGMS_",
"OIO": "http://www.geneontology.org/formats/oboInOwl#",
"PANTHER": "http://www.pantherdb.org/panther/family.do?clsAccession=",
"PMID": "http://www.ncbi.nlm.nih.gov/pubmed/",
"PO": "http://purl.obolibrary.org/obo/PO_",
"PR": "http://purl.obolibrary.org/obo/PR_",
"PW": "http://purl.obolibrary.org/obo/PW_",
"PomBase": "https://www.pombase.org/spombe/result/",
"RHEA": "http://identifiers.org/rhea/",
"RNAcentral": "http://example.org/UNKNOWN/RNAcentral/",
"RO": "http://purl.obolibrary.org/obo/RO_",
"Reactome": "http://example.org/UNKNOWN/Reactome/",
"SEMMEDDB": "http://example.org/UNKNOWN/SEMMEDDB/",
"SGD": "https://www.yeastgenome.org/locus/",
"SIO": "http://semanticscience.org/resource/SIO_",
"SO": "http://purl.obolibrary.org/obo/SO_",
"UBERON": "http://purl.obolibrary.org/obo/UBERON_",
"UMLSSC": "https://uts-ws.nlm.nih.gov/rest/semantic-network/semantic-network/current/TUI/",
"UMLSSG": "https://uts-ws.nlm.nih.gov/rest/semantic-network/semantic-network/current/GROUP/",
"UMLSST": "https://uts-ws.nlm.nih.gov/rest/semantic-network/semantic-network/current/STY/",
"UPHENO": "http://purl.obolibrary.org/obo/UPHENO_",
"UniProtKB": "http://identifiers.org/uniprot/",
"VMC": "http://example.org/UNKNOWN/VMC/",
"WB": "http://identifiers.org/wb/",
"WD": "http://example.org/UNKNOWN/WD/",
"ZFIN": "http://zfin.org/",
"biolinkml": "https://w3id.org/biolink/biolinkml/",
"dct": "http://example.org/UNKNOWN/dct/",
"dcterms": "http://purl.org/dc/terms/",
"dictyBase": "http://dictybase.org/gene/",
"faldo": "http://biohackathon.org/resource/faldo#",
"metatype": "https://w3id.org/biolink/biolinkml/type/",
"owl": "http://www.w3.org/2002/07/owl#",
"pav": "http://purl.org/pav/",
"qud": "http://qudt.org/1.1/schema/qudt#",
"rdf": "http://www.w3.org/1999/02/22-rdf-syntax-ns#",
"rdfs": "http://www.w3.org/2000/01/rdf-schema#",
"shex": "http://www.w3.org/ns/shex#",
"skos": "https://www.w3.org/TR/skos-reference/#",
"void": "http://rdfs.org/ns/void#",
"wgs": "http://www.w3.org/2003/01/geo/wgs84_pos",
"xsd": "http://www.w3.org/2001/XMLSchema#",
"@vocab": "https://w3id.org/biolink/vocab/",
"actively_involved_in": {
"@type": "@id"
},
"affects": {
"@type": "@id"
},
"affects_abundance_of": {
"@type": "@id"
},
"affects_activity_of": {
"@type": "@id"
},
"affects_degradation_of": {
"@type": "@id"
},
"affects_expression_of": {
"@type": "@id"
},
"affects_folding_of": {
"@type": "@id"
},
"affects_localization_of": {
"@type": "@id"
},
"affects_metabolic_processing_of": {
"@type": "@id"
},
"affects_molecular_modification_of": {
"@type": "@id"
},
"affects_mutation_rate_of": {
"@type": "@id"
},
"affects_response_to": {
"@type": "@id"
},
"affects_risk_for": {
"@type": "@id"
},
"affects_secretion_of": {
"@type": "@id"
},
"affects_splicing_of": {
"@type": "@id"
},
"affects_stability_of": {
"@type": "@id"
},
"affects_synthesis_of": {
"@type": "@id"
},
"affects_transport_of": {
"@type": "@id"
},
"affects_uptake_of": {
"@type": "@id"
},
"association_type": {
"@type": "@id"
},
"id": "@id",
"biomarker_for": {
"@type": "@id"
},
"capable_of": {
"@type": "@id"
},
"category": {
"@type": "@id"
},
"causes": {
"@type": "@id"
},
"change_is_catalyzed_by": {
"@type": "@id"
},
"clinical_modifier_qualifier": {
"@type": "@id"
},
"coexists_with": {
"@type": "@id"
},
"colocalizes_with": {
"@type": "@id"
},
"contributes_to": {
"@type": "@id"
},
"correlated_with": {
"@type": "@id"
},
"creation_date": {
"@type": "xsd:date"
},
"decreases_abundance_of": {
"@type": "@id"
},
"decreases_activity_of": {
"@type": "@id"
},
"decreases_degradation_of": {
"@type": "@id"
},
"decreases_expression_of": {
"@type": "@id"
},
"decreases_folding_of": {
"@type": "@id"
},
"decreases_localization_of": {
"@type": "@id"
},
"decreases_metabolic_processing_of": {
"@type": "@id"
},
"decreases_molecular_modification_of": {
"@type": "@id"
},
"decreases_mutation_rate_of": {
"@type": "@id"
},
"decreases_response_to": {
"@type": "@id"
},
"decreases_secretion_of": {
"@type": "@id"
},
"decreases_splicing_of": {
"@type": "@id"
},
"decreases_stability_of": {
"@type": "@id"
},
"decreases_synthesis_of": {
"@type": "@id"
},
"decreases_transport_of": {
"@type": "@id"
},
"decreases_uptake_of": {
"@type": "@id"
},
"derives_from": {
"@type": "@id"
},
"derives_into": {
"@type": "@id"
},
"disrupts": {
"@type": "@id"
},
"distribution": {
"@type": "@id"
},
"enabled_by": {
"@type": "@id"
},
"expressed_in": {
"@type": "@id"
},
"expresses": {
"@type": "@id"
},
"filler": {
"@type": "@id"
},
"frequency_qualifier": {
"@type": "@id"
},
"gene_associated_with_condition": {
"@type": "@id"
},
"genetically_interacts_with": {
"@type": "@id"
},
"has_attribute": {
"@type": "@id"
},
"has_attribute_type": {
"@type": "@id"
},
"has_biomarker": {
"@type": "@id"
},
"has_confidence_level": {
"@type": "@id"
},
"has_count": {
"@type": "xsd:integer"
},
"has_evidence": {
"@type": "@id"
},
"has_gene": {
"@type": "@id"
},
"has_gene_product": {
"@type": "@id"
},
"has_input": {
"@type": "@id"
},
"has_molecular_consequence": {
"@type": "@id"
},
"has_numeric_value": {
"@type": "xsd:double"
},
"has_output": {
"@type": "@id"
},
"has_part": {
"@type": "@id"
},
"has_participant": {
"@type": "@id"
},
"has_percentage": {
"@type": "xsd:double"
},
"has_phenotype": {
"@type": "@id"
},
"has_qualitative_value": {
"@type": "@id"
},
"has_quantitative_value": {
"@type": "@id"
},
"has_quotient": {
"@type": "xsd:double"
},
"has_total": {
"@type": "xsd:integer"
},
"has_unit": {
"@type": "UO:0000000"
},
"has_zygosity": {
"@type": "@id"
},
"homologous_to": {
"@type": "@id"
},
"in_cell_population_with": {
"@type": "@id"
},
"in_complex_with": {
"@type": "@id"
},
"in_pathway_with": {
"@type": "@id"
},
"in_taxon": {
"@type": "@id"
},
"increases_abundance_of": {
"@type": "@id"
},
"increases_activity_of": {
"@type": "@id"
},
"increases_degradation_of": {
"@type": "@id"
},
"increases_expression_of": {
"@type": "@id"
},
"increases_folding_of": {
"@type": "@id"
},
"increases_localization_of": {
"@type": "@id"
},
"increases_metabolic_processing_of": {
"@type": "@id"
},
"increases_molecular_modification_of": {
"@type": "@id"
},
"increases_mutation_rate_of": {
"@type": "@id"
},
"increases_response_to": {
"@type": "@id"
},
"increases_secretion_of": {
"@type": "@id"
},
"increases_splicing_of": {
"@type": "@id"
},
"increases_stability_of": {
"@type": "@id"
},
"increases_synthesis_of": {
"@type": "@id"
},
"increases_transport_of": {
"@type": "@id"
},
"increases_uptake_of": {
"@type": "@id"
},
"interacts_with": {
"@type": "@id"
},
"iri": {
"@type": "@id"
},
"latitude": {
"@type": "xsd:float"
},
"located_in": {
"@type": "@id"
},
"location_of": {
"@type": "@id"
},
"longitude": {
"@type": "xsd:float"
},
"manifestation_of": {
"@type": "@id"
},
"model_of": {
"@type": "@id"
},
"molecularly_interacts_with": {
"@type": "@id"
},
"negated": {
"@type": "xsd:boolean"
},
"negatively_regulates": {
"@type": "@id"
},
"negatively_regulates_entity_to_entity": {
"@type": "@id"
},
"negatively_regulates_process_to_process": {
"@type": "@id"
},
"object": {
"@type": "@id"
},
"occurs_in": {
"@type": "@id"
},
"onset_qualifier": {
"@type": "@id"
},
"orthologous_to": {
"@type": "@id"
},
"overlaps": {
"@type": "@id"
},
"paralogous_to": {
"@type": "@id"
},
"part_of": {
"@type": "@id"
},
"participates_in": {
"@type": "@id"
},
"physically_interacts_with": {
"@type": "@id"
},
"positively_regulates": {
"@type": "@id"
},
"positively_regulates_entity_to_entity": {
"@type": "@id"
},
"positively_regulates_process_to_process": {
"@type": "@id"
},
"precedes": {
"@type": "@id"
},
"predisposes": {
"@type": "@id"
},
"prevents": {
"@type": "@id"
},
"produces": {
"@type": "@id"
},
"provided_by": {
"@type": "@id"
},
"publications": {
"@type": "@id"
},
"qualifiers": {
"@type": "@id"
},
"quantifier_qualifier": {
"@type": "@id"
},
"regulates": {
"@type": "@id"
},
"regulates_entity_to_entity": {
"@type": "@id"
},
"regulates_process_to_process": {
"@type": "@id"
},
"related_to": {
"@type": "@id"
},
"relation": {
"@type": "@id"
},
"retrievedOn": {
"@type": "xsd:date"
},
"same_as": {
"@type": "@id"
},
"sequence_variant_qualifier": {
"@type": "@id"
},
"severity_qualifier": {
"@type": "@id"
},
"sex_qualifier": {
"@type": "@id"
},
"source_data_file": {
"@type": "@id"
},
"stage_qualifier": {
"@type": "@id"
},
"subclass_of": {
"@type": "@id"
},
"subject": {
"@type": "@id"
},
"timepoint": {
"@type": "xsd:dateTime"
},
"treated_by": {
"@type": "@id"
},
"treats": {
"@type": "@id"
},
"update_date": {
"@type": "xsd:date"
},
"versionOf": {
"@type": "@id"
},
"xenologous_to": {
"@type": "@id"
}
}
}