diff --git a/album_catalog_index.db b/album_catalog_index.db index 449b64e..3bca721 100644 Binary files a/album_catalog_index.db and b/album_catalog_index.db differ diff --git a/solutions/cellcanvas/generate-pixel-embedding/CHANGELOG.md b/solutions/cellcanvas/generate-pixel-embedding/CHANGELOG.md index e61a144..82b5845 100644 --- a/solutions/cellcanvas/generate-pixel-embedding/CHANGELOG.md +++ b/solutions/cellcanvas/generate-pixel-embedding/CHANGELOG.md @@ -4,6 +4,9 @@ All notable changes to this project will be documented in this file. The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/), and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). +## [0.1.7] - 2024-08-11 +Remove defaults + ## [0.1.6] - 2024-08-09 diff --git a/solutions/cellcanvas/generate-pixel-embedding/solution.py b/solutions/cellcanvas/generate-pixel-embedding/solution.py index 0450162..21943ab 100644 --- a/solutions/cellcanvas/generate-pixel-embedding/solution.py +++ b/solutions/cellcanvas/generate-pixel-embedding/solution.py @@ -7,7 +7,6 @@ - pytorch - nvidia - conda-forge - - defaults dependencies: - python=3.10 - cudatoolkit=11.8 @@ -174,8 +173,8 @@ def sliding_window_processor(image, roi_size, overlap, device): setup( group="cellcanvas", name="generate-pixel-embedding", - version="0.1.6", - title="Predict Tomogram Embeddings with SwinUNETR using Copick API and generate the tensorboard files", + version="0.1.7", + title="Predict Tomogram Embeddings with SwinUNETR using Copick API", description="Apply a SwinUNETR model to a tomogram fetched using the Copick API to produce embeddings, and save them in a Zarr.", solution_creators=["Kyle Harrington"], tags=["prediction", "deep learning", "cryoet", "tomogram"], @@ -193,4 +192,4 @@ def sliding_window_processor(image, roi_size, overlap, device): dependencies={ "environment_file": env_file }, -) \ No newline at end of file +) diff --git a/solutions/cellcanvas/generate-pixel-embedding/solution.yml b/solutions/cellcanvas/generate-pixel-embedding/solution.yml index 29fabd8..b15a55a 100644 --- a/solutions/cellcanvas/generate-pixel-embedding/solution.yml +++ b/solutions/cellcanvas/generate-pixel-embedding/solution.yml @@ -24,7 +24,7 @@ args: name: embedding_name required: true type: string -changelog: null +changelog: Remove defaults description: Apply a SwinUNETR model to a tomogram fetched using the Copick API to produce embeddings, and save them in a Zarr. group: cellcanvas @@ -37,7 +37,6 @@ tags: - deep learning - cryoet - tomogram -timestamp: '2024-08-09T15:13:18.262701' -title: Predict Tomogram Embeddings with SwinUNETR using Copick API and generate the - tensorboard files -version: 0.1.6 +timestamp: '2024-08-11T10:17:32.207012' +title: Predict Tomogram Embeddings with SwinUNETR using Copick API +version: 0.1.7