Package Homepage: http://bioconductor.org/packages/devel/bioc/html/proBAMr.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=proBAMr
The interpretation of proteomics data is significantly enhanced by genomic annotation. Using proBAMr, peptide-spectrum-matches can be easily reannotated using user-specified gene annotation schemes and assembled into both protein and gene identifications. Using the genome as a common reference, proBAMr facilitates seamless proteomics and proteogenomics data integration. ProBAM files can be readily visualized in genome browsers and thus bring proteomics data analysis to a general audience beyond the proteomics community.
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("proBAMr")Alternatively, you can install the latest version from github using devtools:
# install.packages("devtools")
devtools::install_github("chambm/proBAMr")To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("proBAMr")