cellxgene-schema CLI must update validation for obs['array_row']

[brianraymor]

Changelog

• obs (Cell metadata)
  • Updated the requirements for array_row:
    • MUST be annotated if the assay_ontology_term_id is a descendant of Visium Spatial Gene Expression
    • Added ranges for Visium CytAssist Spatial Gene Expression, 6.5mm and Visium CytAssist Spatial Gene Expression, 11mm

Design

array_row

Key	array_row
Annotator	Curator MUST annotate if assay_ontology_term_id is a descendant of "EFO:0010961" for Visium Spatial Gene Expression and uns['spatial']['is_single'] is True; otherwise, this key MUST NOT be present.
Value	int. This MUST be value of the row coordinate for the corresponding spot from the array_row field in in tissue_positions_list.csv or tissue_positions.csv. See Space Ranger Spatial Outputs. For Assay Value MUST be in the range between Visium Spatial Gene Expression V1 [EFO:0022857] 0 and 77 Visium CytAssist Spatial Gene Expression, 6.5mm [EFO:0022859] 0 and 77 Visium CytAssist Spatial Gene Expression, 11mm [EFO:0022860] 0 and 127