cellxgene-schema CLI must update validation for obs['cell_type_ontology_term_id']

[brianraymor]

Changelog

• obs (Cell metadata)
  • Updated the requirements for cell_type_ontology_term_id to include descendants of Visium Spatial Gene Expression.

Design

cell_type_ontology_term_id

Key	cell_type_ontology_term_id
Annotator	Curator MUST annotate.
Value	categorical with str categories. This MUST be a CL term or "unknown". It MUST be "unknown" when: no appropriate term can be found (e.g. the cell type is unknown) assay_ontology_term_id is a descendant of "EFO:0010961" for Visium Spatial Gene Expression, uns['spatial']['is_single'] is True, and the corresponding value of in_tissue is 0 The following terms MUST NOT be used: "CL:0000255" for eukaryotic cell "CL:0000257" for Eumycetozoan cell "CL:0000548" for animal cell