vars.yml

---
author: Nolan W. <nolan_w@sfu.ca>
url: https://github.com/brinkmanlab/
vendor: Brinkman Lab

containers:
  app:
    name: irida-app  # Must be valid hostname (no underscores)
    image: brinkmanlab/irida-app
  db:
    name: irida-db  # Must be valid hostname (no underscores)
    image: mariadb
  galaxy:
    name: galaxy-web  # Must be valid hostname (no underscores)

volumes:
  user_data:
    name: user-data
  db_data:
    name: db-data

paths:
  data: /irida
  sequences: &sequences /irida/sequences
  reference: &reference /irida/reference
  output: &output /irida/output
  assembly: &assembly /irida/assembly
  tmp: /tmp
  config: /etc/irida
  app: /usr/local/tomcat/webapps/ROOT

irida:
  uid: 1000
  gid: 1000
  web:
    mail.server.host: "{{ hostvars['mail'].hostname }}"
    mail.server.protocol: "{{ hostvars['mail'].protocol }}"
    mail.server.port: "{{ hostvars['mail'].port }}"
  config:
    sequence.file.base.directory: *sequences
    reference.file.base.directory: *reference
    output.file.base.directory: *output
    assembly.file.base.directory: *assembly
    file.processing.core.size: 4
    file.processing.max.size: 8
    file.processing.queue.capacity: 512
    file.processing.process: true
    jdbc.driver: "com.mysql.jdbc.Driver"
    hibernate.dialect: "org.hibernate.dialect.MySQL55Dialect"
    liquibase.update.database.schema: true
    jdbc.pool.initialSize: 10
    jdbc.pool.maxActive: 20
    jdbc.pool.testOnBorrow: true
    jdbc.pool.testOnReturn: true
    jdbc.pool.testWhileIdle: true
    jdbc.pool.validationQuery: "select 1"
    jdbc.pool.maxWait: 10000
    jdbc.pool.removeAbandoned: true
    jdbc.pool.logAbandoned: true
    jdbc.pool.removeAbandonedTimeout: 60
    jdbc.pool.maxIdle: 10
    security.password.expiry: -1
    galaxy.execution.url: "http://{{ containers.galaxy.name }}/"
    galaxy.execution.dataStorage: local
    irida.workflow.max-running: 4
    irida.scheduled.subscription.cron: "0 0 0 * * *"
    irida.scheduled.threads: 2
    ncbi.upload.host: localhost
    ncbi.upload.user: test
    ncbi.upload.password: password
    ncbi.upload.baseDirectory: tmp
    ncbi.upload.port: 21
    ncbi.upload.namespace: IRIDA