diff --git a/authors.html b/authors.html index b946352..83dfe10 100644 --- a/authors.html +++ b/authors.html @@ -50,7 +50,7 @@

Authors

  • Carnegie Mellon University Delphi Group. Data contributor. -
    Owner of masking and social-distancing data from the COVID-19 Trends and Impacts Survey. Owner of claims-based CLI data from the Delphi Epidata API

    +
    Owner of masking, social-distancing, and CLI data from the COVID-19 Trends and Impacts Survey. Owner of claims-based CLI data from the Delphi Epidata API

  • The COVID-19 Canada Open Data Working Group. Data contributor. @@ -60,6 +60,10 @@

    Authors

    Statistics Canada. Data contributor.
    Owner of Canadian graduate employment income data from the Statistics Canada website

    • +
  • +

    Google. Data contributor. +
    Collaborator on CLI data from the Google symptom surveys

    +
    • diff --git a/pkgdown.yml b/pkgdown.yml index 0bad5ee..eaaa63e 100644 --- a/pkgdown.yml +++ b/pkgdown.yml @@ -2,7 +2,7 @@ pandoc: 3.1.11 pkgdown: 2.1.1 pkgdown_sha: ~ articles: {} -last_built: 2024-10-01T22:12Z +last_built: 2024-10-14T19:04Z urls: reference: https://cmu-delphi.github.io/epidatasets/reference article: https://cmu-delphi.github.io/epidatasets/articles diff --git a/reference/archive_cases_dv_subset_all_states.html b/reference/archive_cases_dv_subset_all_states.html new file mode 100644 index 0000000..6a79f55 --- /dev/null +++ b/reference/archive_cases_dv_subset_all_states.html @@ -0,0 +1,117 @@ + +Daily COVID-19 doctor visits and cases from all states in archive format — archive_cases_dv_subset_all_states • epidatasets + Skip to contents + + +
    +
    +
    + +

    Daily COVID-19 doctor visits and cases from all states in archive format

    + +
    archive_cases_dv_subset_all_states.Rd
    +
    + +
    +

    This data source is based on information about outpatient visits, provided +to us by health system partners, and also contains confirmed COVID-19 +cases based on reports made available by the Center for Systems Science +and Engineering at Johns Hopkins University. This example data ranges from +June 1, 2020 to December 1, 2021, issued on dates from June 1, 2020 to December 1, +2021. It includes all US states.

    +

    It is used in the epipredict sliding article.

    +
    + +
    +

    Usage

    + 
    archive_cases_dv_subset_all_states
    +
    + +
    +

    Format

    +

    An epiprocess::epi_archive. The DT attribute contains the data formatted as a data.table::data.table (object of class c("data.table", "data.frame")) with 1514489 rows and 5 columns.

    +
    +
    +

    Source

    +

    This object contains a modified part of the COVID-19 Data Repository by the Center for Systems Science and Engineering (CSSE) at Johns Hopkins University as republished in the COVIDcast Epidata API. This data set is licensed under the terms of the +Creative Commons Attribution 4.0 International license +by Johns Hopkins University on behalf of its Center for Systems Science in Engineering. +Copyright Johns Hopkins University 2020.

    +

    Modifications:

    • From the COVIDcast Doctor Visits API: The signal percent_cli is taken directly from the API without changes.

      • +

    • From the COVIDcast Epidata API: case_rate signal was computed by Delphi from the original JHU-CSSE data by calculating moving averages of the preceding 7 days, so the signal for June 7 is the average of the underlying data for June 1 through 7, inclusive.

      • +

    • Furthermore, the data has been limited to a very small number of rows, the +signal names slightly altered, and formatted into an epi_archive.

      • +
    +
    +

    Data dictionary

    + + +

    The data in the epi_archive$DT attribute has columns:

    geo_value
    +

    the geographic value associated with each row of measurements.

    + +
    time_value
    +

    the time value associated with each row of measurements.

    + +
    version
    +

    the time value specifying the version for each row of measurements.

    + +
    percent_cli
    +

    percentage of doctor’s visits with CLI (COVID-like illness) computed from medical insurance claims

    + +
    case_rate
    +

    7-day average signal of number of new confirmed cases due to COVID-19 per 100,000 population, daily

    + + +
    + +
    + + +
    +

    Developed by Daniel J. McDonald, Nat DeFries.

    +
    + +
    +

    Site built with pkgdown 2.1.1.

    +
    + +
    + + + + + + + diff --git a/reference/case_death_rate_archive.html b/reference/case_death_rate_archive.html new file mode 100644 index 0000000..f791039 --- /dev/null +++ b/reference/case_death_rate_archive.html @@ -0,0 +1,123 @@ + +Daily COVID-19 case and death rates from all states in archive format — case_death_rate_archive • epidatasets + Skip to contents + + +
    +
    +
    + +

    Daily COVID-19 case and death rates from all states in archive format

    + +
    case_death_rate_archive.Rd
    +
    + +
    +

    Data set containing COVID-19 case and death rates (counts per 100000 +population) as reported by the Delphi API, based on reports made available +by the Center for Systems Science and Engineering at Johns Hopkins +University. This example data ranges from March 1, 2020 to November 30, +2021, issued monthly on the first day of each month from September 1, 2020 +to December 1, 2021. It includes all US states, Washington DC, Guam, Puerto +Rico, and the Virgin Islands.

    +
    + +
    +

    Usage

    + 
    case_death_rate_archive
    +
    + +
    +

    Format

    +

    An epiprocess::epi_archive. The DT attribute contains the data formatted as a data.table::data.table (object of class c("data.table", "data.frame")) with 72086 rows and 7 columns.

    +
    +
    +

    Source

    +

    This object contains a modified part of the COVID-19 Data Repository by the Center for Systems Science and Engineering (CSSE) at Johns Hopkins University as republished in the COVIDcast Epidata API. This data set is licensed under the terms of the +Creative Commons Attribution 4.0 International license +by Johns Hopkins University on behalf of its Center for Systems Science in Engineering. +Copyright Johns Hopkins University 2020.

    +

    Modifications:

    • From the COVIDcast Epidata API: The signals case_rate and death_rate are taken directly from the JHU CSSE GitHub repo without changes, served through the Delphi API.

      • +

    • From the COVIDcast Epidata API: Averaged signals were computed from the original JHU-CSSE data by calculating moving averages of the preceding 7 days, so the signal for June 7 is the average of the underlying data for June 1 through 7, inclusive.

      • +

    • Furthermore, the data has been limited to a specific time range, the +signal names slightly altered, and formatted into an epi_archive.

      • +
    +
    +

    Data dictionary

    + + +

    The data in the epi_archive$DT attribute has columns:

    geo_value
    +

    the geographic value associated with each row of measurements.

    + +
    time_value
    +

    the time value associated with each row of measurements.

    + +
    version
    +

    the time value specifying the version for each row of measurements.

    + +
    case_rate
    +

    Number of new confirmed cases due to COVID-19 per 100,000 population, daily

    + +
    case_rate_7d_av
    +

    7-day average signal of number of new confirmed cases due to COVID-19 per 100,000 population, daily

    + +
    death_rate
    +

    Number of new confirmed deaths due to COVID-19 per 100,000 population, daily

    + +
    death_rate_7d_av
    +

    7-day average signal of number of new confirmed deaths due to COVID-19 per 100,000 population, daily

    + + +
    + +
    + + +
    +

    Developed by Daniel J. McDonald, Nat DeFries.

    +
    + +
    +

    Site built with pkgdown 2.1.1.

    +
    + +
    + + + + + + + diff --git a/reference/county_smoothed_cli_comparison.html b/reference/county_smoothed_cli_comparison.html new file mode 100644 index 0000000..7dda9b6 --- /dev/null +++ b/reference/county_smoothed_cli_comparison.html @@ -0,0 +1,161 @@ + +Percent CLI from different surveys, compared to ground truth COVID incidence in a subset of counties — county_smoothed_cli_comparison • epidatasets + Skip to contents + + +
    +
    +
    + +

    Percent CLI from different surveys, compared to ground truth COVID incidence in a subset of counties

    + +
    county_smoothed_cli_comparison.Rd
    +
    + +
    +

    Data set for more than 400 US counties containing CLI +(COVID-19-like-illness) incidence derived from two surveys, and a reference signal as +reported by JHU CSSE. This example data is a snapshot as of September 21, +2020, and ranges from April 11, 2020 to September 01, 2020.

    +

    The reference signal case is based on reports made available +by the Center for Systems Science and Engineering at Johns Hopkins +University.

    +

    One survey was +run by Google, +in partnership with Delphi.

    +

    The other survey, the +COVID-19 Trends and Impact Survey, +was run by Delphi in collaboration with Facebook.

    +

    Data is reported for counties that had at least 200 cumulative COVID-19 cases +on May 14, 2020, according to JHU CSSE.

    +
    + +
    +

    Usage

    + 
    county_smoothed_cli_comparison
    +
    + +
    +

    Format

    +

    An epiprocess::epi_df (object of class c("epi_df", "tbl_df", "tbl", "data.frame")) with 63840 rows and 5 columns.

    +
    +
    +

    Source

    +

    This object contains a modified part of the COVID-19 Data Repository by the Center for Systems Science and Engineering (CSSE) at Johns Hopkins University as republished in the COVIDcast Epidata API. This data set is licensed under the terms of the +Creative Commons Attribution 4.0 International license +by Johns Hopkins University on behalf of its Center for Systems Science in Engineering. +Copyright Johns Hopkins University 2020.

    +

    Modifications:

    • From the COVIDcast Epidata API: The signal confirmed_cumulative_num was used to determine eligibility for inclusion. The signal confirmed_7dav_incidence_prop was computed by Delphi from the original JHU-CSSE data by calculating moving averages of the preceding 7 days, so the signal for June 7 is the average of the underlying data for June 1 through 7, inclusive.

      • +

    • Furthermore, the data has been limited to a specific time range, the +signal names slightly altered, and formatted into an epi_df.

      • +

    This object contains a modified part of the +data +aggregations in the API that are prepared from the +COVID-19 +Trends and Impact Survey; see the first link for more information on +citing in publications. +The data is made available via the +Delphi Epidata API.

    +

    These aggregations are licensed under the terms of +the Creative Commons +Attribution license.

    +

    Modifications:

    • The data has been limited to a very small number of rows, the +signal names slightly altered, and formatted into an epi_df.

      • +

    This object contains a modified part of the +Google symptom surveys. +Aggregations based on the survey are licensed under the terms of +the Creative Commons +Attribution license.

    +

    Modifications:

    • The data has been limited to a very small number of rows, the +signal names slightly altered, and formatted into an epi_df.

      • +
    +
    +

    Data dictionary

    + + +

    The data has columns:

    geo_value
    +

    The 5-digit county FIPS code associated with each +row of measurements.

    + +
    time_value
    +

    The time value, a date in YYYY-MM-DD format

    + +
    goog
    +

    Seven-day average of CLI (covid-like-illness) cases from the Google survey

    + +
    fb
    +

    Seven-day average of CLI (covid-like-illness) cases from CTIS

    + +
    case
    +

    Reference signal. Seven-day average of CLI (covid-like-illness) cases

    + + +
    + +
    + + +
    +

    Developed by Daniel J. McDonald, Nat DeFries.

    +
    + +
    +

    Site built with pkgdown 2.1.1.

    +
    + +
    + + + + + + + diff --git a/reference/covid_case_death_rates.html b/reference/covid_case_death_rates.html index 83f5c92..d4e8c59 100644 --- a/reference/covid_case_death_rates.html +++ b/reference/covid_case_death_rates.html @@ -2,14 +2,14 @@ JHU daily COVID-19 cases and deaths rates from all states — covid_case_death_rates • epidatasets +includes all states."> Skip to contents @@ -45,9 +45,9 @@

    JHU daily COVID-19 cases and deaths rates from all states

    This data source of confirmed COVID-19 cases and deaths is based on reports made available by the Center for Systems Science and Engineering at Johns Hopkins University, as downloaded from the CMU Delphi COVIDcast Epidata -API. This example data is a snapshot as of March 20, 2024, and +API. This example data is a snapshot as of May 31, 2022, and ranges from December 31, 2020 to December 31, 2021. It -includes all states. It is used in the epiprocess correlation vignette.

    +includes all states.

    @@ -57,7 +57,7 @@

    Usage

    Format

    -

    An epiprocess::epi_df (object of class c("epi_df", "tbl_df", "tbl", "data.frame")) with 37576 rows and 4 columns.

    +

    An epiprocess::epi_df (object of class c("epi_df", "tbl_df", "tbl", "data.frame")) with 20496 rows and 4 columns.

    Source

    diff --git a/reference/covid_case_death_rates_extended.html b/reference/covid_case_death_rates_extended.html new file mode 100644 index 0000000..fdc3ee6 --- /dev/null +++ b/reference/covid_case_death_rates_extended.html @@ -0,0 +1,124 @@ + +JHU daily COVID-19 cases and deaths rates from all states — covid_case_death_rates_extended • epidatasets + Skip to contents + + +
    +
    +
    + +

    JHU daily COVID-19 cases and deaths rates from all states

    + +
    covid_case_death_rates_extended.Rd
    +
    + +
    +

    This data source of confirmed COVID-19 cases and deaths is based on reports +made available by the Center for Systems Science and Engineering at Johns +Hopkins University, as downloaded from the CMU Delphi COVIDcast Epidata +API. This example data is a snapshot as of May 31, 2022, and +ranges from March 1, 2020 to December 31, 2021. It +includes all states.

    +
    + +
    +

    Usage

    + 
    covid_case_death_rates_extended
    +
    + +
    +

    Format

    +

    An epiprocess::epi_df (object of class c("epi_df", "tbl_df", "tbl", "data.frame")) with 37576 rows and 4 columns.

    +
    +
    +

    Source

    +

    This object contains a modified part of the +COVID-19 Data Repository by the Center for Systems Science and Engineering (CSSE) at Johns Hopkins University +as republished in the COVIDcast Epidata API. +This data set is licensed under the terms of the +Creative Commons Attribution 4.0 International license +by the Johns Hopkins University on behalf of its Center for Systems Science +in Engineering. Copyright Johns Hopkins University 2020.

    +

    Modifications:

    • From the COVIDcast Epidata API: +These signals are taken directly from the JHU CSSE +COVID-19 GitHub repository +without changes. The 7-day average signals are computed by Delphi by +calculating moving averages of the preceding 7 days, so the signal for +June 7 is the average of the underlying data for June 1 through 7, +inclusive.

      • +
    +
    +

    Details

    +

    It is used in the epiprocess correlation vignettes.

    +
    +
    +

    Data dictionary

    + + +

    The data has columns:

    geo_value
    +

    the geographic value associated with each row +of measurements.

    + +
    time_value
    +

    the time value associated with each row of measurements.

    + +
    case_rate
    +

    7-day average signal of number of new +confirmed COVID-19 cases per 100,000 population, daily

    + +
    death_rate
    +

    7-day average signal of number of new confirmed +deaths due to COVID-19 per 100,000 population, daily

    + + +
    + +
    + + +
    +

    Developed by Daniel J. McDonald, Nat DeFries.

    +
    + +
    +

    Site built with pkgdown 2.1.1.

    +
    + +
    + + + + + + + diff --git a/reference/covid_confirmed_cumulative_num.html b/reference/covid_confirmed_cumulative_num.html new file mode 100644 index 0000000..1ffed69 --- /dev/null +++ b/reference/covid_confirmed_cumulative_num.html @@ -0,0 +1,141 @@ + +Subset of COVID-19 cumulative case counts from 4 states — covid_confirmed_cumulative_num • epidatasets + Skip to contents + + +
    +
    +
    + +

    Subset of COVID-19 cumulative case counts from 4 states

    + +
    covid_confirmed_cumulative_num.Rd
    +
    + +
    +

    Data set for 4 states containing COVID-19 Cumulative Cases as reported by +JHU-CSSE and downloaded from the CMU Delphi COVIDcast Epidata API. +This example data is a snapshot as of March 20, 2024, and +ranges from March 1, 2020 to January 31, 2022. It is limited +to California, Florida, New York, and Texas.

    +

    It is used in the epiprocess "Getting Started" vignette.

    +
    + +
    +

    Usage

    + 
    covid_confirmed_cumulative_num
    +
    + +
    +

    Format

    +

    A tibble::tibble (object of class c("tbl_df", "tbl", "data.frame")) with 2808 rows and 15 columns.

    +
    +
    +

    Source

    +

    This object contains a modified part of the COVID-19 Data Repository by the Center for Systems Science and Engineering (CSSE) at Johns Hopkins University as republished in the COVIDcast Epidata API. This data set is licensed under the terms of the +Creative Commons Attribution 4.0 International license +by the Johns Hopkins University on behalf of its Center for Systems Science in Engineering. +Copyright Johns Hopkins University 2020.

    +

    Modifications:

    +
    +

    Data dictionary

    + + +

    The data has columns:

    geo_value
    +

    the geographic value associated with each row of measurements.

    + +
    signal
    +

    name of metric, derived from upstream data.

    + +
    source
    +

    name of upstream data source.

    + +
    geo_type
    +

    spatial resolution of the signal.

    + +
    time_type
    +

    temporal resolution of the signal.

    + +
    time_value
    +

    the time value associated with each row of measurements.

    + +
    issue
    +

    time unit (e.g., date) when the signal data were published.

    + +
    lag
    +

    time delta (e.g. days) between when the underlying events happened and when the data were published.

    + +
    missing_value
    +

    an integer code that is zero when the value field is present and non-zero when the data is missing (see missing codes).

    + +
    missing_stderr
    +

    an integer code that is zero when the stderr field is present and non-zero when the data is missing (see missing codes).

    + +
    missing_sample_size
    +

    an integer code that is zero when the sample_size field is present and non-zero when the data is missing (see missing codes).

    + +
    value
    +

    cumulative number of confirmed COVID-19 cases, derived from the underlying data source.

    + +
    stderr
    +

    approximate standard error of the statistic with respect to its sampling distribution, NA when not applicable.

    + +
    sample_size
    +

    number of “data points” used in computing the statistic, NA when not applicable.

    + + +
    + +
    + + +
    +

    Developed by Daniel J. McDonald, Nat DeFries.

    +
    + +
    +

    Site built with pkgdown 2.1.1.

    +
    + +
    + + + + + + + diff --git a/reference/ctis_covid_behaviours.html b/reference/ctis_covid_behaviours.html index 446f682..318cb10 100644 --- a/reference/ctis_covid_behaviours.html +++ b/reference/ctis_covid_behaviours.html @@ -54,7 +54,7 @@

    Usage

    Format

    -

    A tibble::tibble (object of class c("tbl_df", "tbl", "data.frame")) with 1055 rows and 4 columns.

    +

    An epiprocess::epi_df (object of class c("epi_df", "tbl_df", "tbl", "data.frame")) with 1055 rows and 4 columns.

    Source

    diff --git a/reference/grad_employ_subset.html b/reference/grad_employ_subset.html index bdfd7fe..6b1f1c9 100644 --- a/reference/grad_employ_subset.html +++ b/reference/grad_employ_subset.html @@ -54,7 +54,7 @@

    Usage

    Format

    -

    An epiprocess::epi_df (object of class c("epi_df", "tbl_df", "tbl", "data.frame")) with 10193 rows and 8 columns.

    +

    An epiprocess::epi_df (object of class c("epi_df", "tbl_df", "tbl", "data.frame")) with 1445 rows and 7 columns.

    Source

    @@ -86,9 +86,6 @@

    Data dictionaryedu_qual

    The education qualification

    -
    fos
    -

    The field of study

    -
    age_group

    The age group; either 15 to 34 or 35 to 64

    diff --git a/reference/index.html b/reference/index.html index 3acc038..ae40088 100644 --- a/reference/index.html +++ b/reference/index.html @@ -48,12 +48,24 @@

    All functionsarchive_cases_dv_subset_all_states + + +
    Daily COVID-19 doctor visits and cases from all states in archive format
    +
    + can_prov_cases
    Canadian COVID-19 case rates
    + case_death_rate_archive + +
    +
    Daily COVID-19 case and death rates from all states in archive format
    +
    + cases_deaths_subset
    @@ -66,12 +78,30 @@

    All functionscounty_smoothed_cli_comparison + + +
    Percent CLI from different surveys, compared to ground truth COVID incidence in a subset of counties
    +

    + covid_case_death_rates
    JHU daily COVID-19 cases and deaths rates from all states
    + covid_case_death_rates_extended + +
    +
    JHU daily COVID-19 cases and deaths rates from all states
    +
    + + covid_confirmed_cumulative_num + +
    +
    Subset of COVID-19 cumulative case counts from 4 states
    +
    + covid_incidence_county_subset
    @@ -96,12 +126,6 @@

    All functionsjhu_confirmed_cumulative_num - - -
    Subset of COVID-19 cumulative case counts from 4 states
    -

    - state_census
    diff --git a/search.json b/search.json index 9401b4c..ec500c1 100644 --- a/search.json +++ b/search.json @@ -1 +1 @@ -[{"path":"https://cmu-delphi.github.io/epidatasets/authors.html","id":null,"dir":"","previous_headings":"","what":"Authors","title":"Authors and Citation","text":"Daniel J. McDonald. Author. Nat DeFries. Maintainer, author. Johns Hopkins University Center Systems Science Engineering. Data contributor. Owner COVID-19 cases deaths data COVID-19 Data Repository Johns Hopkins University. Copyright holder. Copyright holder COVID-19 cases deaths data COVID-19 Data Repository Carnegie Mellon University Delphi Group. Data contributor. Owner masking social-distancing data COVID-19 Trends Impacts Survey. Owner claims-based CLI data Delphi Epidata API COVID-19 Canada Open Data Working Group. Data contributor. Owner Canadian COVID-19 cases rates Covid19Canada data repository Statistics Canada. Data contributor. Owner Canadian graduate employment income data Statistics Canada website","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/authors.html","id":"citation","dir":"","previous_headings":"","what":"Citation","title":"Authors and Citation","text":"McDonald DJ, DeFries N (2024). epidatasets: Epidemiological Data Delphi Tooling Examples. R package version 0.0.1, https://cmu-delphi.github.io/epidatasets/.","code":"@Manual{, title = {epidatasets: Epidemiological Data for Delphi Tooling Examples}, author = {Daniel J. McDonald and Nat DeFries}, year = {2024}, note = {R package version 0.0.1}, url = {https://cmu-delphi.github.io/epidatasets/}, }"},{"path":"https://cmu-delphi.github.io/epidatasets/index.html","id":"epidatasets","dir":"","previous_headings":"","what":"Epidemiological Data for Delphi Tooling Examples","title":"Epidemiological Data for Delphi Tooling Examples","text":"package contains data sets used compile vignettes documentation Delphi R Packages. goal avoid calls Delphi Epidata API, deposit examples easy offline use.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/index.html","id":"installation","dir":"","previous_headings":"","what":"Installation","title":"Epidemiological Data for Delphi Tooling Examples","text":"can install development version epidatasets like :","code":"# install.packages(\"remotes\") remotes::install_github(\"cmu-delphi/epidatasets\")"},{"path":"https://cmu-delphi.github.io/epidatasets/index.html","id":"contents","dir":"","previous_headings":"","what":"Contents","title":"Epidemiological Data for Delphi Tooling Examples","text":"package contains number different datasets, along code used generate . See Source Code want examine necessary API calls. data included epi_df format, subclass tbl_df subclass data.frame. data print nicely load epiprocess tibble packages, required access inspect data sets. example, Compared Compared Note epi_df comes metadata (visible final version), describes observation frequency, time_type, unit geographical measurement, geo_type data vintage, as_of. , see epiprocess. visually inclined, particular data set contains reported 7-day averaged cases deaths per capita handful US states.","code":"library(epidatasets) head(cases_deaths_subset) #> geo_value time_value case_rate_7d_av death_rate_7d_av cases cases_7d_av #> 1 ca 2020-03-01 0.0032659 0.0000000 6 1.285714 #> 2 ca 2020-03-02 0.0043545 0.0000000 4 1.714286 #> 3 ca 2020-03-03 0.0061689 0.0000000 6 2.428571 #> 4 ca 2020-03-04 0.0097976 0.0003629 11 3.857143 #> 5 ca 2020-03-05 0.0134264 0.0003629 10 5.285714 #> 6 ca 2020-03-06 0.0199582 0.0003629 18 7.857143 library(tibble) cases_deaths_subset #> # A tibble: 4,026 × 6 #> geo_value time_value case_rate_7d_av death_rate_7d_av cases cases_7d_av #> * #> 1 ca 2020-03-01 0.00327 0 6 1.29 #> 2 ca 2020-03-02 0.00435 0 4 1.71 #> 3 ca 2020-03-03 0.00617 0 6 2.43 #> 4 ca 2020-03-04 0.00980 0.000363 11 3.86 #> 5 ca 2020-03-05 0.0134 0.000363 10 5.29 #> 6 ca 2020-03-06 0.0200 0.000363 18 7.86 #> 7 ca 2020-03-07 0.0294 0.000363 26 11.6 #> 8 ca 2020-03-08 0.0341 0.000363 19 13.4 #> 9 ca 2020-03-09 0.0410 0.000726 23 16.1 #> 10 ca 2020-03-10 0.0468 0.000726 22 18.4 #> # ℹ 4,016 more rows library(epiprocess) cases_deaths_subset #> An `epi_df` object, 4,026 x 6 with metadata: #> * geo_type = state #> * time_type = day #> * as_of = 2023-06-07 16:50:07.8681 #> #> # A tibble: 4,026 × 6 #> geo_value time_value case_rate_7d_av death_rate_7d_av cases cases_7d_av #> * #> 1 ca 2020-03-01 0.00327 0 6 1.29 #> 2 ca 2020-03-02 0.00435 0 4 1.71 #> 3 ca 2020-03-03 0.00617 0 6 2.43 #> 4 ca 2020-03-04 0.00980 0.000363 11 3.86 #> 5 ca 2020-03-05 0.0134 0.000363 10 5.29 #> 6 ca 2020-03-06 0.0200 0.000363 18 7.86 #> 7 ca 2020-03-07 0.0294 0.000363 26 11.6 #> 8 ca 2020-03-08 0.0341 0.000363 19 13.4 #> 9 ca 2020-03-09 0.0410 0.000726 23 16.1 #> 10 ca 2020-03-10 0.0468 0.000726 22 18.4 #> # ℹ 4,016 more rows"},{"path":"https://cmu-delphi.github.io/epidatasets/reference/archive_cases_dv_subset.html","id":null,"dir":"Reference","previous_headings":"","what":"Subset of daily COVID-19 doctor visits and cases from 6 states in archive format — archive_cases_dv_subset","title":"Subset of daily COVID-19 doctor visits and cases from 6 states in archive format — archive_cases_dv_subset","text":"data source based information outpatient visits, provided us health system partners, also contains confirmed COVID-19 cases based reports made available Center Systems Science Engineering Johns Hopkins University. example data ranges June 1, 2020 December 1, 2021, issued dates June 1, 2020 December 1, 2021. limited California, Florida, Texas, New York. used epiprocess compactify, epi_archive, advanced-use (advanced) vignettes.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/archive_cases_dv_subset.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Subset of daily COVID-19 doctor visits and cases from 6 states in archive format — archive_cases_dv_subset","text":"","code":"archive_cases_dv_subset"},{"path":"https://cmu-delphi.github.io/epidatasets/reference/archive_cases_dv_subset.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Subset of daily COVID-19 doctor visits and cases from 6 states in archive format — archive_cases_dv_subset","text":"epiprocess::epi_archive. DT attribute contains data formatted data.table::data.table (object class c(\"data.table\", \"data.frame\")) 129638 rows 5 columns.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/archive_cases_dv_subset.html","id":"source","dir":"Reference","previous_headings":"","what":"Source","title":"Subset of daily COVID-19 doctor visits and cases from 6 states in archive format — archive_cases_dv_subset","text":"object contains modified part COVID-19 Data Repository Center Systems Science Engineering (CSSE) Johns Hopkins University republished COVIDcast Epidata API. data set licensed terms Creative Commons Attribution 4.0 International license Johns Hopkins University behalf Center Systems Science Engineering. Copyright Johns Hopkins University 2020. Modifications: COVIDcast Epidata API: case_rate_7d_av signal computed Delphi original JHU-CSSE data calculating moving averages preceding 7 days, signal June 7 average underlying data June 1 7, inclusive. Furthermore, data limited small number rows, signal names slightly altered, formatted epi_archive. object contains modified part Delphi doctor-visits indicator. data source computed Delphi Group information outpatient visits, provided Delphi health system partners, published COVIDcast Epidata API. data set licensed terms Creative Commons Attribution 4.0 International license Delphi group. Modifications: COVIDcast Doctor Visits signal: signal smoothed_adj_cli taken directly API without changes. Furthermore, data limited small number rows, signal names slightly altered, formatted epi_archive.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/archive_cases_dv_subset.html","id":"data-dictionary","dir":"Reference","previous_headings":"","what":"Data dictionary","title":"Subset of daily COVID-19 doctor visits and cases from 6 states in archive format — archive_cases_dv_subset","text":"data epi_archive$DT attribute columns: geo_value geographic value associated row measurements. time_value time value associated row measurements. version time value specifying version row measurements. percent_cli percentage doctor’s visits CLI (COVID-like illness) computed medical insurance claims case_rate_7d_av 7-day average signal number new confirmed cases due COVID-19 per 100,000 population, daily","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/can_prov_cases.html","id":null,"dir":"Reference","previous_headings":"","what":"Canadian COVID-19 case rates — can_prov_cases","title":"Canadian COVID-19 case rates — can_prov_cases","text":"Data set Canadian provinces territories containing COVID-19 case rates (COVID-19 cases per 100,000 people) derived COVID-19 case counts reported COVID-19 Canada Open Data Working Group (CCODWG). Data available archived ccodwg/Covid19Canada GitHub repository newer ccodwg/CovidTimelineCanada GitHub repository, also reports vaccine-related signals.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/can_prov_cases.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Canadian COVID-19 case rates — can_prov_cases","text":"","code":"can_prov_cases"},{"path":"https://cmu-delphi.github.io/epidatasets/reference/can_prov_cases.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Canadian COVID-19 case rates — can_prov_cases","text":"epiprocess::epi_archive. DT attribute contains data formatted data.table::data.table (object class c(\"data.table\", \"data.frame\")) 65299 rows 4 columns.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/can_prov_cases.html","id":"source","dir":"Reference","previous_headings":"","what":"Source","title":"Canadian COVID-19 case rates — can_prov_cases","text":"object contains modified part COVID-19 Canada Open Data Working Group's Covid19Canada data repository (archived). data set licensed terms Creative Commons Attribution 4.0 International license COVID-19 Canada Open Data Working Group. COVID-19 Canada Open Data Working Group collected data publicly available sources government datasets news releases. Modifications: case rate signal calculated using case count taken directly CCODWG ccodwg/Covid19Canada GitHub repository population data. Furthermore, data limited small number rows, signal names slightly altered, province names replaced abbreviations, formatted epi_archive. population data used (included dataset ) mountainMath/BCCovidSnippets GitHub repository.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/can_prov_cases.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Canadian COVID-19 case rates — can_prov_cases","text":"dataset contains versioned data snapshots February 1, 2021 December 1, 2021 covering period April 2, 2020 December 1, 2021. used epipredict slide vignette.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/can_prov_cases.html","id":"data-dictionary","dir":"Reference","previous_headings":"","what":"Data dictionary","title":"Canadian COVID-19 case rates — can_prov_cases","text":"data epi_archive$DT attribute columns: version time value specifying version row measurements. geo_value province territory associated row measurements. time_value time value associated row measurements. case_rate number new confirmed cases due COVID-19 per 100,000 population, daily","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/cases_deaths_subset.html","id":null,"dir":"Reference","previous_headings":"","what":"Subset of JHU daily state COVID-19 cases and deaths from 6 states — cases_deaths_subset","title":"Subset of JHU daily state COVID-19 cases and deaths from 6 states — cases_deaths_subset","text":"data source confirmed COVID-19 cases deaths based reports made available Center Systems Science Engineering Johns Hopkins University. example data snapshot March 20, 2024, ranges March 1, 2020 December 31, 2021. limited California, Florida, Texas, New York, Georgia, Pennsylvania. used epiprocess growth rate epi_slide vignettes.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/cases_deaths_subset.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Subset of JHU daily state COVID-19 cases and deaths from 6 states — cases_deaths_subset","text":"","code":"cases_deaths_subset"},{"path":"https://cmu-delphi.github.io/epidatasets/reference/cases_deaths_subset.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Subset of JHU daily state COVID-19 cases and deaths from 6 states — cases_deaths_subset","text":"epiprocess::epi_df (object class c(\"epi_df\", \"tbl_df\", \"tbl\", \"data.frame\")) 4026 rows 6 columns.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/cases_deaths_subset.html","id":"source","dir":"Reference","previous_headings":"","what":"Source","title":"Subset of JHU daily state COVID-19 cases and deaths from 6 states — cases_deaths_subset","text":"object contains modified part COVID-19 Data Repository Center Systems Science Engineering (CSSE) Johns Hopkins University republished COVIDcast Epidata API. data set licensed terms Creative Commons Attribution 4.0 International license Johns Hopkins University behalf Center Systems Science Engineering. Copyright Johns Hopkins University 2020. Modifications: COVIDcast Epidata API: case signal taken directly JHU CSSE COVID-19 GitHub repository. rate signals computed Delphi using Census population data. 7-day average signals computed Delphi calculating moving averages preceding 7 days, signal June 7 average underlying data June 1 7, inclusive. Furthermore, data limited small number rows, signal names slightly altered, formatted epi_df.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/cases_deaths_subset.html","id":"data-dictionary","dir":"Reference","previous_headings":"","what":"Data dictionary","title":"Subset of JHU daily state COVID-19 cases and deaths from 6 states — cases_deaths_subset","text":"data columns: geo_value geographic value associated row measurements. time_value time value associated row measurements. case_rate_7d_av 7-day average signal number new confirmed COVID-19 cases per 100,000 population, daily death_rate_7d_av 7-day average signal number new confirmed deaths due COVID-19 per 100,000 population, daily cases Number new confirmed COVID-19 cases, daily cases_7d_av 7-day average signal number new confirmed COVID-19 cases, daily","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/counts_subset.html","id":null,"dir":"Reference","previous_headings":"","what":"Subset of COVID-19 incident cases and deaths from 5 states — counts_subset","title":"Subset of COVID-19 incident cases and deaths from 5 states — counts_subset","text":"Data set 5 states containing COVID-19 Incident Cases Deaths reported JHU-CSSE downloaded CMU Delphi COVIDcast Epidata API. example data snapshot March 20, 2024, ranges June 4, 2021 December 31, 2021. limited California, Florida, Texas, New Jersey, New York.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/counts_subset.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Subset of COVID-19 incident cases and deaths from 5 states — counts_subset","text":"","code":"counts_subset"},{"path":"https://cmu-delphi.github.io/epidatasets/reference/counts_subset.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Subset of COVID-19 incident cases and deaths from 5 states — counts_subset","text":"epiprocess::epi_df (object class c(\"epi_df\", \"tbl_df\", \"tbl\", \"data.frame\")) 1055 rows 4 columns.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/counts_subset.html","id":"source","dir":"Reference","previous_headings":"","what":"Source","title":"Subset of COVID-19 incident cases and deaths from 5 states — counts_subset","text":"object contains modified part COVID-19 Data Repository Center Systems Science Engineering (CSSE) Johns Hopkins University republished COVIDcast Epidata API. data set licensed terms Creative Commons Attribution 4.0 International license Johns Hopkins University behalf Center Systems Science Engineering. Copyright Johns Hopkins University 2020. Modifications: COVIDcast Epidata API: signals taken directly JHU CSSE COVID-19 GitHub repository without changes. Furthermore, data limited small number rows, signal names slightly altered, formatted epi_df.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/counts_subset.html","id":"data-dictionary","dir":"Reference","previous_headings":"","what":"Data dictionary","title":"Subset of COVID-19 incident cases and deaths from 5 states — counts_subset","text":"data columns: geo_value geographic value associated row measurements. time_value time value associated row measurements. cases Number new confirmed COVID-19 cases, daily deaths Number new confirmed COVID-19 deaths, daily","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/covid_case_death_rates.html","id":null,"dir":"Reference","previous_headings":"","what":"JHU daily COVID-19 cases and deaths rates from all states — covid_case_death_rates","title":"JHU daily COVID-19 cases and deaths rates from all states — covid_case_death_rates","text":"data source confirmed COVID-19 cases deaths based reports made available Center Systems Science Engineering Johns Hopkins University, downloaded CMU Delphi COVIDcast Epidata API. example data snapshot March 20, 2024, ranges December 31, 2020 December 31, 2021. includes states. used epiprocess correlation vignette.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/covid_case_death_rates.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"JHU daily COVID-19 cases and deaths rates from all states — covid_case_death_rates","text":"","code":"covid_case_death_rates"},{"path":"https://cmu-delphi.github.io/epidatasets/reference/covid_case_death_rates.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"JHU daily COVID-19 cases and deaths rates from all states — covid_case_death_rates","text":"epiprocess::epi_df (object class c(\"epi_df\", \"tbl_df\", \"tbl\", \"data.frame\")) 37576 rows 4 columns.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/covid_case_death_rates.html","id":"source","dir":"Reference","previous_headings":"","what":"Source","title":"JHU daily COVID-19 cases and deaths rates from all states — covid_case_death_rates","text":"object contains modified part COVID-19 Data Repository Center Systems Science Engineering (CSSE) Johns Hopkins University republished COVIDcast Epidata API. data set licensed terms Creative Commons Attribution 4.0 International license Johns Hopkins University behalf Center Systems Science Engineering. Copyright Johns Hopkins University 2020. Modifications: COVIDcast Epidata API: signals taken directly JHU CSSE COVID-19 GitHub repository without changes. 7-day average signals computed Delphi calculating moving averages preceding 7 days, signal June 7 average underlying data June 1 7, inclusive.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/covid_case_death_rates.html","id":"data-dictionary","dir":"Reference","previous_headings":"","what":"Data dictionary","title":"JHU daily COVID-19 cases and deaths rates from all states — covid_case_death_rates","text":"data columns: geo_value geographic value associated row measurements. time_value time value associated row measurements. case_rate 7-day average signal number new confirmed COVID-19 cases per 100,000 population, daily death_rate 7-day average signal number new confirmed deaths due COVID-19 per 100,000 population, daily","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/covid_incidence_county_subset.html","id":null,"dir":"Reference","previous_headings":"","what":"Subset of JHU daily COVID-19 cases from counties in Massachusetts and Vermont — covid_incidence_county_subset","title":"Subset of JHU daily COVID-19 cases from counties in Massachusetts and Vermont — covid_incidence_county_subset","text":"data source confirmed COVID-19 cases deaths based reports made available Center Systems Science Engineering Johns Hopkins University. example data snapshot March 20, 2024, ranges March 1, 2020 December 31, 2021. limited counties Massachusetts Vermont. used epiprocess aggregation vignette.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/covid_incidence_county_subset.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Subset of JHU daily COVID-19 cases from counties in Massachusetts and Vermont — covid_incidence_county_subset","text":"","code":"covid_incidence_county_subset"},{"path":"https://cmu-delphi.github.io/epidatasets/reference/covid_incidence_county_subset.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Subset of JHU daily COVID-19 cases from counties in Massachusetts and Vermont — covid_incidence_county_subset","text":"epiprocess::epi_df (object class c(\"epi_df\", \"tbl_df\", \"tbl\", \"data.frame\")) 16212 rows 5 columns.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/covid_incidence_county_subset.html","id":"source","dir":"Reference","previous_headings":"","what":"Source","title":"Subset of JHU daily COVID-19 cases from counties in Massachusetts and Vermont — covid_incidence_county_subset","text":"object contains modified part COVID-19 Data Repository Center Systems Science Engineering (CSSE) Johns Hopkins University republished COVIDcast Epidata API. data set licensed terms Creative Commons Attribution 4.0 International license Johns Hopkins University behalf Center Systems Science Engineering. Copyright Johns Hopkins University 2020. Modifications: COVIDcast Epidata API: signals taken directly JHU CSSE COVID-19 GitHub repository without changes. 7-day average signals computed Delphi moving averages preceding 7 days, signal June 7 average underlying data June 1 7, inclusive. Furthermore, data limited small number rows, formatted epi_df, signal names slightly altered.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/covid_incidence_county_subset.html","id":"data-dictionary","dir":"Reference","previous_headings":"","what":"Data dictionary","title":"Subset of JHU daily COVID-19 cases from counties in Massachusetts and Vermont — covid_incidence_county_subset","text":"data columns: geo_value geographic value associated row measurements. time_value time value associated row measurements. cases Number new confirmed COVID-19 cases, daily county_name name county state_name full name state","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/covid_incidence_outliers.html","id":null,"dir":"Reference","previous_headings":"","what":"Subset of JHU daily COVID-19 cases from New Jersey and Florida — covid_incidence_outliers","title":"Subset of JHU daily COVID-19 cases from New Jersey and Florida — covid_incidence_outliers","text":"data source confirmed COVID-19 cases based reports made available Center Systems Science Engineering Johns Hopkins University. example data downloaded CMU Delphi COVIDcast Epidata API. snapshot October 28, 2021, captures cases June 1, 2020 May 31, 2021. limited New Jersey Florida. data set used epiprocess vignette outliers.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/covid_incidence_outliers.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Subset of JHU daily COVID-19 cases from New Jersey and Florida — covid_incidence_outliers","text":"","code":"covid_incidence_outliers"},{"path":"https://cmu-delphi.github.io/epidatasets/reference/covid_incidence_outliers.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Subset of JHU daily COVID-19 cases from New Jersey and Florida — covid_incidence_outliers","text":"epiprocess::epi_df (object class c(\"epi_df\", \"tbl_df\", \"tbl\", \"data.frame\")) 730 rows 3 columns.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/covid_incidence_outliers.html","id":"source","dir":"Reference","previous_headings":"","what":"Source","title":"Subset of JHU daily COVID-19 cases from New Jersey and Florida — covid_incidence_outliers","text":"object contains modified part COVID-19 Data Repository Center Systems Science Engineering (CSSE) Johns Hopkins University republished COVIDcast Epidata API. data set licensed terms Creative Commons Attribution 4.0 International license Johns Hopkins University behalf Center Systems Science Engineering. Copyright Johns Hopkins University 2020. Modifications: COVIDcast Epidata API: signals taken directly JHU CSSE COVID-19 GitHub repository without changes. Furthermore, data limited small number rows, formatted epi_df, signal names slightly altered.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/covid_incidence_outliers.html","id":"data-dictionary","dir":"Reference","previous_headings":"","what":"Data dictionary","title":"Subset of JHU daily COVID-19 cases from New Jersey and Florida — covid_incidence_outliers","text":"data columns: geo_value geographic value associated row measurements. time_value time value associated row measurements. cases Number new confirmed COVID-19 cases, daily","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/ctis_covid_behaviours.html","id":null,"dir":"Reference","previous_headings":"","what":"Subset of CTIS COVID-19-related behaviours from 5 states — ctis_covid_behaviours","title":"Subset of CTIS COVID-19-related behaviours from 5 states — ctis_covid_behaviours","text":"Data set handful states masking distancing behaviours COVID-19 Pandemic, downloaded CMU Delphi COVIDcast Epidata API. example data snapshot March 20, 2024, ranges June 4, 2021 December 31, 2021. limited California, Florida, Texas, New Jersey, New York.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/ctis_covid_behaviours.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Subset of CTIS COVID-19-related behaviours from 5 states — ctis_covid_behaviours","text":"","code":"ctis_covid_behaviours"},{"path":"https://cmu-delphi.github.io/epidatasets/reference/ctis_covid_behaviours.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Subset of CTIS COVID-19-related behaviours from 5 states — ctis_covid_behaviours","text":"tibble::tibble (object class c(\"tbl_df\", \"tbl\", \"data.frame\")) 1055 rows 4 columns.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/ctis_covid_behaviours.html","id":"source","dir":"Reference","previous_headings":"","what":"Source","title":"Subset of CTIS COVID-19-related behaviours from 5 states — ctis_covid_behaviours","text":"object contains modified part data aggregations API prepared COVID-19 Trends Impact Survey; see first link information citing publications. data made available via Delphi Epidata API. aggregations licensed terms Creative Commons Attribution license. Modifications: data limited small number rows, signal names slightly altered, formatted epi_df.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/ctis_covid_behaviours.html","id":"data-dictionary","dir":"Reference","previous_headings":"","what":"Data dictionary","title":"Subset of CTIS COVID-19-related behaviours from 5 states — ctis_covid_behaviours","text":"data columns: geo_value geographic value associated row measurements. time_value time value associated row measurements. masking Estimated percentage people wore mask time public past 7 days; public past 7 days counted. distancing Estimated percentage respondents reported people encountered public past 7 days maintained distance least 6 feet. Respondents said public past 7 days excluded.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/grad_employ_subset.html","id":null,"dir":"Reference","previous_headings":"","what":"Subset of Statistics Canada median employment income for postsecondary graduates — grad_employ_subset","title":"Subset of Statistics Canada median employment income for postsecondary graduates — grad_employ_subset","text":"Data set territories (aggregated) 10 provinces containing yearly income data postsecondary graduates reported Statistics Canada, downloaded Statistics Canada website www.statcan.gc.ca. example data snapshot September 18, 2024, ranges 2010 2017 (yearly).","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/grad_employ_subset.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Subset of Statistics Canada median employment income for postsecondary graduates — grad_employ_subset","text":"","code":"grad_employ_subset"},{"path":"https://cmu-delphi.github.io/epidatasets/reference/grad_employ_subset.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Subset of Statistics Canada median employment income for postsecondary graduates — grad_employ_subset","text":"epiprocess::epi_df (object class c(\"epi_df\", \"tbl_df\", \"tbl\", \"data.frame\")) 10193 rows 8 columns.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/grad_employ_subset.html","id":"source","dir":"Reference","previous_headings":"","what":"Source","title":"Subset of Statistics Canada median employment income for postsecondary graduates — grad_employ_subset","text":"object contains modified data adapted Statistics Canada, Table 37-10-0115-01 Characteristics median employment income longitudinal cohorts postsecondary graduates two five years graduation, educational qualification field study (primary groupings). constitute endorsement Statistics Canada product. data licensed terms Statistics Canada Open License. Modifications: provincial territorial regions kept. age group, field study, educational qualification kept covariates. remaining covariates, keep aggregated values drop level-specific rows. modifications made time range data.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/grad_employ_subset.html","id":"data-dictionary","dir":"Reference","previous_headings":"","what":"Data dictionary","title":"Subset of Statistics Canada median employment income for postsecondary graduates — grad_employ_subset","text":"data columns: geo_value province Canada associated row measurements. time_value time value, year integer YYYY format edu_qual education qualification fos field study age_group age group; either 15 34 35 64 num_graduates number graduates given row characteristics med_income_2y median employment income two years graduation med_income_5y median employment income five years graduation","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/jhu_confirmed_cumulative_num.html","id":null,"dir":"Reference","previous_headings":"","what":"Subset of COVID-19 cumulative case counts from 4 states — jhu_confirmed_cumulative_num","title":"Subset of COVID-19 cumulative case counts from 4 states — jhu_confirmed_cumulative_num","text":"Data set 4 states containing COVID-19 Cumulative Cases reported JHU-CSSE downloaded CMU Delphi COVIDcast Epidata API. example data snapshot March 20, 2024, ranges March 1, 2020 January 31, 2022. limited California, Florida, New York, Texas. used epiprocess \"Getting Started\" vignette.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/jhu_confirmed_cumulative_num.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Subset of COVID-19 cumulative case counts from 4 states — jhu_confirmed_cumulative_num","text":"","code":"jhu_confirmed_cumulative_num"},{"path":"https://cmu-delphi.github.io/epidatasets/reference/jhu_confirmed_cumulative_num.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Subset of COVID-19 cumulative case counts from 4 states — jhu_confirmed_cumulative_num","text":"tibble::tibble (object class c(\"tbl_df\", \"tbl\", \"data.frame\")) 2808 rows 15 columns.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/jhu_confirmed_cumulative_num.html","id":"source","dir":"Reference","previous_headings":"","what":"Source","title":"Subset of COVID-19 cumulative case counts from 4 states — jhu_confirmed_cumulative_num","text":"object contains modified part COVID-19 Data Repository Center Systems Science Engineering (CSSE) Johns Hopkins University republished COVIDcast Epidata API. data set licensed terms Creative Commons Attribution 4.0 International license Johns Hopkins University behalf Center Systems Science Engineering. Copyright Johns Hopkins University 2020. Modifications: COVIDcast Epidata API: signals taken directly JHU CSSE COVID-19 GitHub repository without changes. Furthermore, data limited small number rows, formatted epi_df, signal names slightly altered.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/jhu_confirmed_cumulative_num.html","id":"data-dictionary","dir":"Reference","previous_headings":"","what":"Data dictionary","title":"Subset of COVID-19 cumulative case counts from 4 states — jhu_confirmed_cumulative_num","text":"data columns: geo_value geographic value associated row measurements. signal name metric, derived upstream data. source name upstream data source. geo_type spatial resolution signal. time_type temporal resolution signal. time_value time value associated row measurements. issue time unit (e.g., date) signal data published. lag time delta (e.g. days) underlying events happened data published. missing_value integer code zero value field present non-zero data missing (see missing codes). missing_stderr integer code zero stderr field present non-zero data missing (see missing codes). missing_sample_size integer code zero sample_size field present non-zero data missing (see missing codes). value cumulative number confirmed COVID-19 cases, derived underlying data source. stderr approximate standard error statistic respect sampling distribution, NA applicable. sample_size number “data points” used computing statistic, NA applicable.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/state_census.html","id":null,"dir":"Reference","previous_headings":"","what":"State population data — state_census","title":"State population data — state_census","text":"Data set state populations, 2019 US Census.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/state_census.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"State population data — state_census","text":"","code":"state_census"},{"path":"https://cmu-delphi.github.io/epidatasets/reference/state_census.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"State population data — state_census","text":"tibble::tibble (object class c(\"tbl_df\", \"tbl\", \"data.frame\")) 57 rows 4 columns.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/state_census.html","id":"source","dir":"Reference","previous_headings":"","what":"Source","title":"State population data — state_census","text":"object derived several datasets United States Census Bureau, Population Division, https://www2.census.gov/programs-surveys/popest/datasets/2010-2019/counties/totals/co-est2019-alldata.pdf, https://www.census.gov/data/tables/time-series/demo/popest/2010s-total-puerto-rico-municipios.html, https://www.census.gov/data/tables/2010/dec/2010-island-areas.html. made available covidcast package. data public domain.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/state_census.html","id":"data-dictionary","dir":"Reference","previous_headings":"","what":"Data dictionary","title":"State population data — state_census","text":"data includes 57 regions (US states, United States whole, District Columbia, Puerto Rico Commonwealth, American Samoa, Guam, U.S. Virgin Islands, Northern Mariana Islands) columns: fips 2-digit FIPS code name Full name state territory pop Estimate location's resident population 2019. abbr Postal abbreviation location","code":""}] +[{"path":"https://cmu-delphi.github.io/epidatasets/authors.html","id":null,"dir":"","previous_headings":"","what":"Authors","title":"Authors and Citation","text":"Daniel J. McDonald. Author. Nat DeFries. Maintainer, author. Johns Hopkins University Center Systems Science Engineering. Data contributor. Owner COVID-19 cases deaths data COVID-19 Data Repository Johns Hopkins University. Copyright holder. Copyright holder COVID-19 cases deaths data COVID-19 Data Repository Carnegie Mellon University Delphi Group. Data contributor. Owner masking, social-distancing, CLI data COVID-19 Trends Impacts Survey. Owner claims-based CLI data Delphi Epidata API COVID-19 Canada Open Data Working Group. Data contributor. Owner Canadian COVID-19 cases rates Covid19Canada data repository Statistics Canada. Data contributor. Owner Canadian graduate employment income data Statistics Canada website Google. Data contributor. Collaborator CLI data Google symptom surveys","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/authors.html","id":"citation","dir":"","previous_headings":"","what":"Citation","title":"Authors and Citation","text":"McDonald DJ, DeFries N (2024). epidatasets: Epidemiological Data Delphi Tooling Examples. R package version 0.0.1, https://cmu-delphi.github.io/epidatasets/.","code":"@Manual{, title = {epidatasets: Epidemiological Data for Delphi Tooling Examples}, author = {Daniel J. McDonald and Nat DeFries}, year = {2024}, note = {R package version 0.0.1}, url = {https://cmu-delphi.github.io/epidatasets/}, }"},{"path":"https://cmu-delphi.github.io/epidatasets/index.html","id":"epidatasets","dir":"","previous_headings":"","what":"Epidemiological Data for Delphi Tooling Examples","title":"Epidemiological Data for Delphi Tooling Examples","text":"package contains data sets used compile vignettes documentation Delphi R Packages. goal avoid calls Delphi Epidata API, deposit examples easy offline use.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/index.html","id":"installation","dir":"","previous_headings":"","what":"Installation","title":"Epidemiological Data for Delphi Tooling Examples","text":"can install development version epidatasets like :","code":"# install.packages(\"remotes\") remotes::install_github(\"cmu-delphi/epidatasets\")"},{"path":"https://cmu-delphi.github.io/epidatasets/index.html","id":"contents","dir":"","previous_headings":"","what":"Contents","title":"Epidemiological Data for Delphi Tooling Examples","text":"package contains number different datasets, along code used generate . See Source Code want examine necessary API calls. data included epi_df format, subclass tbl_df subclass data.frame. data print nicely load epiprocess tibble packages, required access inspect data sets. example, Compared Compared Note epi_df comes metadata (visible final version), describes observation frequency, time_type, unit geographical measurement, geo_type data vintage, as_of. , see epiprocess. visually inclined, particular data set contains reported 7-day averaged cases deaths per capita handful US states.","code":"library(epidatasets) head(cases_deaths_subset) #> geo_value time_value case_rate_7d_av death_rate_7d_av cases cases_7d_av #> 1 ca 2020-03-01 0.0032659 0.0000000 6 1.285714 #> 2 ca 2020-03-02 0.0043545 0.0000000 4 1.714286 #> 3 ca 2020-03-03 0.0061689 0.0000000 6 2.428571 #> 4 ca 2020-03-04 0.0097976 0.0003629 11 3.857143 #> 5 ca 2020-03-05 0.0134264 0.0003629 10 5.285714 #> 6 ca 2020-03-06 0.0199582 0.0003629 18 7.857143 library(tibble) cases_deaths_subset #> # A tibble: 4,026 × 6 #> geo_value time_value case_rate_7d_av death_rate_7d_av cases cases_7d_av #> * #> 1 ca 2020-03-01 0.00327 0 6 1.29 #> 2 ca 2020-03-02 0.00435 0 4 1.71 #> 3 ca 2020-03-03 0.00617 0 6 2.43 #> 4 ca 2020-03-04 0.00980 0.000363 11 3.86 #> 5 ca 2020-03-05 0.0134 0.000363 10 5.29 #> 6 ca 2020-03-06 0.0200 0.000363 18 7.86 #> 7 ca 2020-03-07 0.0294 0.000363 26 11.6 #> 8 ca 2020-03-08 0.0341 0.000363 19 13.4 #> 9 ca 2020-03-09 0.0410 0.000726 23 16.1 #> 10 ca 2020-03-10 0.0468 0.000726 22 18.4 #> # ℹ 4,016 more rows library(epiprocess) cases_deaths_subset #> An `epi_df` object, 4,026 x 6 with metadata: #> * geo_type = state #> * time_type = day #> * as_of = 2023-06-07 16:50:07.8681 #> #> # A tibble: 4,026 × 6 #> geo_value time_value case_rate_7d_av death_rate_7d_av cases cases_7d_av #> * #> 1 ca 2020-03-01 0.00327 0 6 1.29 #> 2 ca 2020-03-02 0.00435 0 4 1.71 #> 3 ca 2020-03-03 0.00617 0 6 2.43 #> 4 ca 2020-03-04 0.00980 0.000363 11 3.86 #> 5 ca 2020-03-05 0.0134 0.000363 10 5.29 #> 6 ca 2020-03-06 0.0200 0.000363 18 7.86 #> 7 ca 2020-03-07 0.0294 0.000363 26 11.6 #> 8 ca 2020-03-08 0.0341 0.000363 19 13.4 #> 9 ca 2020-03-09 0.0410 0.000726 23 16.1 #> 10 ca 2020-03-10 0.0468 0.000726 22 18.4 #> # ℹ 4,016 more rows"},{"path":"https://cmu-delphi.github.io/epidatasets/reference/archive_cases_dv_subset.html","id":null,"dir":"Reference","previous_headings":"","what":"Subset of daily COVID-19 doctor visits and cases from 6 states in archive format — archive_cases_dv_subset","title":"Subset of daily COVID-19 doctor visits and cases from 6 states in archive format — archive_cases_dv_subset","text":"data source based information outpatient visits, provided us health system partners, also contains confirmed COVID-19 cases based reports made available Center Systems Science Engineering Johns Hopkins University. example data ranges June 1, 2020 December 1, 2021, issued dates June 1, 2020 December 1, 2021. limited California, Florida, Texas, New York. used epiprocess compactify, epi_archive, advanced-use (advanced) vignettes.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/archive_cases_dv_subset.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Subset of daily COVID-19 doctor visits and cases from 6 states in archive format — archive_cases_dv_subset","text":"","code":"archive_cases_dv_subset"},{"path":"https://cmu-delphi.github.io/epidatasets/reference/archive_cases_dv_subset.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Subset of daily COVID-19 doctor visits and cases from 6 states in archive format — archive_cases_dv_subset","text":"epiprocess::epi_archive. DT attribute contains data formatted data.table::data.table (object class c(\"data.table\", \"data.frame\")) 129638 rows 5 columns.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/archive_cases_dv_subset.html","id":"source","dir":"Reference","previous_headings":"","what":"Source","title":"Subset of daily COVID-19 doctor visits and cases from 6 states in archive format — archive_cases_dv_subset","text":"object contains modified part COVID-19 Data Repository Center Systems Science Engineering (CSSE) Johns Hopkins University republished COVIDcast Epidata API. data set licensed terms Creative Commons Attribution 4.0 International license Johns Hopkins University behalf Center Systems Science Engineering. Copyright Johns Hopkins University 2020. Modifications: COVIDcast Epidata API: case_rate_7d_av signal computed Delphi original JHU-CSSE data calculating moving averages preceding 7 days, signal June 7 average underlying data June 1 7, inclusive. Furthermore, data limited small number rows, signal names slightly altered, formatted epi_archive. object contains modified part Delphi doctor-visits indicator. data source computed Delphi Group information outpatient visits, provided Delphi health system partners, published COVIDcast Epidata API. data set licensed terms Creative Commons Attribution 4.0 International license Delphi group. Modifications: COVIDcast Doctor Visits signal: signal smoothed_adj_cli taken directly API without changes. Furthermore, data limited small number rows, signal names slightly altered, formatted epi_archive.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/archive_cases_dv_subset.html","id":"data-dictionary","dir":"Reference","previous_headings":"","what":"Data dictionary","title":"Subset of daily COVID-19 doctor visits and cases from 6 states in archive format — archive_cases_dv_subset","text":"data epi_archive$DT attribute columns: geo_value geographic value associated row measurements. time_value time value associated row measurements. version time value specifying version row measurements. percent_cli percentage doctor’s visits CLI (COVID-like illness) computed medical insurance claims case_rate_7d_av 7-day average signal number new confirmed cases due COVID-19 per 100,000 population, daily","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/archive_cases_dv_subset_all_states.html","id":null,"dir":"Reference","previous_headings":"","what":"Daily COVID-19 doctor visits and cases from all states in archive format — archive_cases_dv_subset_all_states","title":"Daily COVID-19 doctor visits and cases from all states in archive format — archive_cases_dv_subset_all_states","text":"data source based information outpatient visits, provided us health system partners, also contains confirmed COVID-19 cases based reports made available Center Systems Science Engineering Johns Hopkins University. example data ranges June 1, 2020 December 1, 2021, issued dates June 1, 2020 December 1, 2021. includes US states. used epipredict sliding article.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/archive_cases_dv_subset_all_states.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Daily COVID-19 doctor visits and cases from all states in archive format — archive_cases_dv_subset_all_states","text":"","code":"archive_cases_dv_subset_all_states"},{"path":"https://cmu-delphi.github.io/epidatasets/reference/archive_cases_dv_subset_all_states.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Daily COVID-19 doctor visits and cases from all states in archive format — archive_cases_dv_subset_all_states","text":"epiprocess::epi_archive. DT attribute contains data formatted data.table::data.table (object class c(\"data.table\", \"data.frame\")) 1514489 rows 5 columns.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/archive_cases_dv_subset_all_states.html","id":"source","dir":"Reference","previous_headings":"","what":"Source","title":"Daily COVID-19 doctor visits and cases from all states in archive format — archive_cases_dv_subset_all_states","text":"object contains modified part COVID-19 Data Repository Center Systems Science Engineering (CSSE) Johns Hopkins University republished COVIDcast Epidata API. data set licensed terms Creative Commons Attribution 4.0 International license Johns Hopkins University behalf Center Systems Science Engineering. Copyright Johns Hopkins University 2020. Modifications: COVIDcast Doctor Visits API: signal percent_cli taken directly API without changes. COVIDcast Epidata API: case_rate signal computed Delphi original JHU-CSSE data calculating moving averages preceding 7 days, signal June 7 average underlying data June 1 7, inclusive. Furthermore, data limited small number rows, signal names slightly altered, formatted epi_archive.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/archive_cases_dv_subset_all_states.html","id":"data-dictionary","dir":"Reference","previous_headings":"","what":"Data dictionary","title":"Daily COVID-19 doctor visits and cases from all states in archive format — archive_cases_dv_subset_all_states","text":"data epi_archive$DT attribute columns: geo_value geographic value associated row measurements. time_value time value associated row measurements. version time value specifying version row measurements. percent_cli percentage doctor’s visits CLI (COVID-like illness) computed medical insurance claims case_rate 7-day average signal number new confirmed cases due COVID-19 per 100,000 population, daily","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/can_prov_cases.html","id":null,"dir":"Reference","previous_headings":"","what":"Canadian COVID-19 case rates — can_prov_cases","title":"Canadian COVID-19 case rates — can_prov_cases","text":"Data set Canadian provinces territories containing COVID-19 case rates (COVID-19 cases per 100,000 people) derived COVID-19 case counts reported COVID-19 Canada Open Data Working Group (CCODWG). Data available archived ccodwg/Covid19Canada GitHub repository newer ccodwg/CovidTimelineCanada GitHub repository, also reports vaccine-related signals.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/can_prov_cases.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Canadian COVID-19 case rates — can_prov_cases","text":"","code":"can_prov_cases"},{"path":"https://cmu-delphi.github.io/epidatasets/reference/can_prov_cases.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Canadian COVID-19 case rates — can_prov_cases","text":"epiprocess::epi_archive. DT attribute contains data formatted data.table::data.table (object class c(\"data.table\", \"data.frame\")) 65299 rows 4 columns.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/can_prov_cases.html","id":"source","dir":"Reference","previous_headings":"","what":"Source","title":"Canadian COVID-19 case rates — can_prov_cases","text":"object contains modified part COVID-19 Canada Open Data Working Group's Covid19Canada data repository (archived). data set licensed terms Creative Commons Attribution 4.0 International license COVID-19 Canada Open Data Working Group. COVID-19 Canada Open Data Working Group collected data publicly available sources government datasets news releases. Modifications: case rate signal calculated using case count taken directly CCODWG ccodwg/Covid19Canada GitHub repository population data. Furthermore, data limited small number rows, signal names slightly altered, province names replaced abbreviations, formatted epi_archive. population data used (included dataset ) mountainMath/BCCovidSnippets GitHub repository.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/can_prov_cases.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Canadian COVID-19 case rates — can_prov_cases","text":"dataset contains versioned data snapshots February 1, 2021 December 1, 2021 covering period April 2, 2020 December 1, 2021. used epipredict slide vignette.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/can_prov_cases.html","id":"data-dictionary","dir":"Reference","previous_headings":"","what":"Data dictionary","title":"Canadian COVID-19 case rates — can_prov_cases","text":"data epi_archive$DT attribute columns: version time value specifying version row measurements. geo_value province territory associated row measurements. time_value time value associated row measurements. case_rate number new confirmed cases due COVID-19 per 100,000 population, daily","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/case_death_rate_archive.html","id":null,"dir":"Reference","previous_headings":"","what":"Daily COVID-19 case and death rates from all states in archive format — case_death_rate_archive","title":"Daily COVID-19 case and death rates from all states in archive format — case_death_rate_archive","text":"Data set containing COVID-19 case death rates (counts per 100000 population) reported Delphi API, based reports made available Center Systems Science Engineering Johns Hopkins University. example data ranges March 1, 2020 November 30, 2021, issued monthly first day month September 1, 2020 December 1, 2021. includes US states, Washington DC, Guam, Puerto Rico, Virgin Islands.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/case_death_rate_archive.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Daily COVID-19 case and death rates from all states in archive format — case_death_rate_archive","text":"","code":"case_death_rate_archive"},{"path":"https://cmu-delphi.github.io/epidatasets/reference/case_death_rate_archive.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Daily COVID-19 case and death rates from all states in archive format — case_death_rate_archive","text":"epiprocess::epi_archive. DT attribute contains data formatted data.table::data.table (object class c(\"data.table\", \"data.frame\")) 72086 rows 7 columns.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/case_death_rate_archive.html","id":"source","dir":"Reference","previous_headings":"","what":"Source","title":"Daily COVID-19 case and death rates from all states in archive format — case_death_rate_archive","text":"object contains modified part COVID-19 Data Repository Center Systems Science Engineering (CSSE) Johns Hopkins University republished COVIDcast Epidata API. data set licensed terms Creative Commons Attribution 4.0 International license Johns Hopkins University behalf Center Systems Science Engineering. Copyright Johns Hopkins University 2020. Modifications: COVIDcast Epidata API: signals case_rate death_rate taken directly JHU CSSE GitHub repo without changes, served Delphi API. COVIDcast Epidata API: Averaged signals computed original JHU-CSSE data calculating moving averages preceding 7 days, signal June 7 average underlying data June 1 7, inclusive. Furthermore, data limited specific time range, signal names slightly altered, formatted epi_archive.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/case_death_rate_archive.html","id":"data-dictionary","dir":"Reference","previous_headings":"","what":"Data dictionary","title":"Daily COVID-19 case and death rates from all states in archive format — case_death_rate_archive","text":"data epi_archive$DT attribute columns: geo_value geographic value associated row measurements. time_value time value associated row measurements. version time value specifying version row measurements. case_rate Number new confirmed cases due COVID-19 per 100,000 population, daily case_rate_7d_av 7-day average signal number new confirmed cases due COVID-19 per 100,000 population, daily death_rate Number new confirmed deaths due COVID-19 per 100,000 population, daily death_rate_7d_av 7-day average signal number new confirmed deaths due COVID-19 per 100,000 population, daily","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/cases_deaths_subset.html","id":null,"dir":"Reference","previous_headings":"","what":"Subset of JHU daily state COVID-19 cases and deaths from 6 states — cases_deaths_subset","title":"Subset of JHU daily state COVID-19 cases and deaths from 6 states — cases_deaths_subset","text":"data source confirmed COVID-19 cases deaths based reports made available Center Systems Science Engineering Johns Hopkins University. example data snapshot March 20, 2024, ranges March 1, 2020 December 31, 2021. limited California, Florida, Texas, New York, Georgia, Pennsylvania. used epiprocess growth rate epi_slide vignettes.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/cases_deaths_subset.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Subset of JHU daily state COVID-19 cases and deaths from 6 states — cases_deaths_subset","text":"","code":"cases_deaths_subset"},{"path":"https://cmu-delphi.github.io/epidatasets/reference/cases_deaths_subset.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Subset of JHU daily state COVID-19 cases and deaths from 6 states — cases_deaths_subset","text":"epiprocess::epi_df (object class c(\"epi_df\", \"tbl_df\", \"tbl\", \"data.frame\")) 4026 rows 6 columns.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/cases_deaths_subset.html","id":"source","dir":"Reference","previous_headings":"","what":"Source","title":"Subset of JHU daily state COVID-19 cases and deaths from 6 states — cases_deaths_subset","text":"object contains modified part COVID-19 Data Repository Center Systems Science Engineering (CSSE) Johns Hopkins University republished COVIDcast Epidata API. data set licensed terms Creative Commons Attribution 4.0 International license Johns Hopkins University behalf Center Systems Science Engineering. Copyright Johns Hopkins University 2020. Modifications: COVIDcast Epidata API: case signal taken directly JHU CSSE COVID-19 GitHub repository. rate signals computed Delphi using Census population data. 7-day average signals computed Delphi calculating moving averages preceding 7 days, signal June 7 average underlying data June 1 7, inclusive. Furthermore, data limited small number rows, signal names slightly altered, formatted epi_df.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/cases_deaths_subset.html","id":"data-dictionary","dir":"Reference","previous_headings":"","what":"Data dictionary","title":"Subset of JHU daily state COVID-19 cases and deaths from 6 states — cases_deaths_subset","text":"data columns: geo_value geographic value associated row measurements. time_value time value associated row measurements. case_rate_7d_av 7-day average signal number new confirmed COVID-19 cases per 100,000 population, daily death_rate_7d_av 7-day average signal number new confirmed deaths due COVID-19 per 100,000 population, daily cases Number new confirmed COVID-19 cases, daily cases_7d_av 7-day average signal number new confirmed COVID-19 cases, daily","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/counts_subset.html","id":null,"dir":"Reference","previous_headings":"","what":"Subset of COVID-19 incident cases and deaths from 5 states — counts_subset","title":"Subset of COVID-19 incident cases and deaths from 5 states — counts_subset","text":"Data set 5 states containing COVID-19 Incident Cases Deaths reported JHU-CSSE downloaded CMU Delphi COVIDcast Epidata API. example data snapshot March 20, 2024, ranges June 4, 2021 December 31, 2021. limited California, Florida, Texas, New Jersey, New York.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/counts_subset.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Subset of COVID-19 incident cases and deaths from 5 states — counts_subset","text":"","code":"counts_subset"},{"path":"https://cmu-delphi.github.io/epidatasets/reference/counts_subset.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Subset of COVID-19 incident cases and deaths from 5 states — counts_subset","text":"epiprocess::epi_df (object class c(\"epi_df\", \"tbl_df\", \"tbl\", \"data.frame\")) 1055 rows 4 columns.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/counts_subset.html","id":"source","dir":"Reference","previous_headings":"","what":"Source","title":"Subset of COVID-19 incident cases and deaths from 5 states — counts_subset","text":"object contains modified part COVID-19 Data Repository Center Systems Science Engineering (CSSE) Johns Hopkins University republished COVIDcast Epidata API. data set licensed terms Creative Commons Attribution 4.0 International license Johns Hopkins University behalf Center Systems Science Engineering. Copyright Johns Hopkins University 2020. Modifications: COVIDcast Epidata API: signals taken directly JHU CSSE COVID-19 GitHub repository without changes. Furthermore, data limited small number rows, signal names slightly altered, formatted epi_df.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/counts_subset.html","id":"data-dictionary","dir":"Reference","previous_headings":"","what":"Data dictionary","title":"Subset of COVID-19 incident cases and deaths from 5 states — counts_subset","text":"data columns: geo_value geographic value associated row measurements. time_value time value associated row measurements. cases Number new confirmed COVID-19 cases, daily deaths Number new confirmed COVID-19 deaths, daily","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/county_smoothed_cli_comparison.html","id":null,"dir":"Reference","previous_headings":"","what":"Percent CLI from different surveys, compared to ground truth COVID incidence in a subset of counties — county_smoothed_cli_comparison","title":"Percent CLI from different surveys, compared to ground truth COVID incidence in a subset of counties — county_smoothed_cli_comparison","text":"Data set 400 US counties containing CLI (COVID-19-like-illness) incidence derived two surveys, reference signal reported JHU CSSE. example data snapshot September 21, 2020, ranges April 11, 2020 September 01, 2020. reference signal case based reports made available Center Systems Science Engineering Johns Hopkins University. One survey run Google, partnership Delphi. survey, COVID-19 Trends Impact Survey, run Delphi collaboration Facebook. Data reported counties least 200 cumulative COVID-19 cases May 14, 2020, according JHU CSSE.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/county_smoothed_cli_comparison.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Percent CLI from different surveys, compared to ground truth COVID incidence in a subset of counties — county_smoothed_cli_comparison","text":"","code":"county_smoothed_cli_comparison"},{"path":"https://cmu-delphi.github.io/epidatasets/reference/county_smoothed_cli_comparison.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Percent CLI from different surveys, compared to ground truth COVID incidence in a subset of counties — county_smoothed_cli_comparison","text":"epiprocess::epi_df (object class c(\"epi_df\", \"tbl_df\", \"tbl\", \"data.frame\")) 63840 rows 5 columns.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/county_smoothed_cli_comparison.html","id":"source","dir":"Reference","previous_headings":"","what":"Source","title":"Percent CLI from different surveys, compared to ground truth COVID incidence in a subset of counties — county_smoothed_cli_comparison","text":"object contains modified part COVID-19 Data Repository Center Systems Science Engineering (CSSE) Johns Hopkins University republished COVIDcast Epidata API. data set licensed terms Creative Commons Attribution 4.0 International license Johns Hopkins University behalf Center Systems Science Engineering. Copyright Johns Hopkins University 2020. Modifications: COVIDcast Epidata API: signal confirmed_cumulative_num used determine eligibility inclusion. signal confirmed_7dav_incidence_prop computed Delphi original JHU-CSSE data calculating moving averages preceding 7 days, signal June 7 average underlying data June 1 7, inclusive. Furthermore, data limited specific time range, signal names slightly altered, formatted epi_df. object contains modified part data aggregations API prepared COVID-19 Trends Impact Survey; see first link information citing publications. data made available via Delphi Epidata API. aggregations licensed terms Creative Commons Attribution license. Modifications: data limited small number rows, signal names slightly altered, formatted epi_df. object contains modified part Google symptom surveys. Aggregations based survey licensed terms Creative Commons Attribution license. Modifications: data limited small number rows, signal names slightly altered, formatted epi_df.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/county_smoothed_cli_comparison.html","id":"data-dictionary","dir":"Reference","previous_headings":"","what":"Data dictionary","title":"Percent CLI from different surveys, compared to ground truth COVID incidence in a subset of counties — county_smoothed_cli_comparison","text":"data columns: geo_value 5-digit county FIPS code associated row measurements. time_value time value, date YYYY-MM-DD format goog Seven-day average CLI (covid-like-illness) cases Google survey fb Seven-day average CLI (covid-like-illness) cases CTIS case Reference signal. Seven-day average CLI (covid-like-illness) cases","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/covid_case_death_rates.html","id":null,"dir":"Reference","previous_headings":"","what":"JHU daily COVID-19 cases and deaths rates from all states — covid_case_death_rates","title":"JHU daily COVID-19 cases and deaths rates from all states — covid_case_death_rates","text":"data source confirmed COVID-19 cases deaths based reports made available Center Systems Science Engineering Johns Hopkins University, downloaded CMU Delphi COVIDcast Epidata API. example data snapshot May 31, 2022, ranges December 31, 2020 December 31, 2021. includes states.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/covid_case_death_rates.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"JHU daily COVID-19 cases and deaths rates from all states — covid_case_death_rates","text":"","code":"covid_case_death_rates"},{"path":"https://cmu-delphi.github.io/epidatasets/reference/covid_case_death_rates.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"JHU daily COVID-19 cases and deaths rates from all states — covid_case_death_rates","text":"epiprocess::epi_df (object class c(\"epi_df\", \"tbl_df\", \"tbl\", \"data.frame\")) 20496 rows 4 columns.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/covid_case_death_rates.html","id":"source","dir":"Reference","previous_headings":"","what":"Source","title":"JHU daily COVID-19 cases and deaths rates from all states — covid_case_death_rates","text":"object contains modified part COVID-19 Data Repository Center Systems Science Engineering (CSSE) Johns Hopkins University republished COVIDcast Epidata API. data set licensed terms Creative Commons Attribution 4.0 International license Johns Hopkins University behalf Center Systems Science Engineering. Copyright Johns Hopkins University 2020. Modifications: COVIDcast Epidata API: signals taken directly JHU CSSE COVID-19 GitHub repository without changes. 7-day average signals computed Delphi calculating moving averages preceding 7 days, signal June 7 average underlying data June 1 7, inclusive.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/covid_case_death_rates.html","id":"data-dictionary","dir":"Reference","previous_headings":"","what":"Data dictionary","title":"JHU daily COVID-19 cases and deaths rates from all states — covid_case_death_rates","text":"data columns: geo_value geographic value associated row measurements. time_value time value associated row measurements. case_rate 7-day average signal number new confirmed COVID-19 cases per 100,000 population, daily death_rate 7-day average signal number new confirmed deaths due COVID-19 per 100,000 population, daily","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/covid_case_death_rates_extended.html","id":null,"dir":"Reference","previous_headings":"","what":"JHU daily COVID-19 cases and deaths rates from all states — covid_case_death_rates_extended","title":"JHU daily COVID-19 cases and deaths rates from all states — covid_case_death_rates_extended","text":"data source confirmed COVID-19 cases deaths based reports made available Center Systems Science Engineering Johns Hopkins University, downloaded CMU Delphi COVIDcast Epidata API. example data snapshot May 31, 2022, ranges March 1, 2020 December 31, 2021. includes states.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/covid_case_death_rates_extended.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"JHU daily COVID-19 cases and deaths rates from all states — covid_case_death_rates_extended","text":"","code":"covid_case_death_rates_extended"},{"path":"https://cmu-delphi.github.io/epidatasets/reference/covid_case_death_rates_extended.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"JHU daily COVID-19 cases and deaths rates from all states — covid_case_death_rates_extended","text":"epiprocess::epi_df (object class c(\"epi_df\", \"tbl_df\", \"tbl\", \"data.frame\")) 37576 rows 4 columns.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/covid_case_death_rates_extended.html","id":"source","dir":"Reference","previous_headings":"","what":"Source","title":"JHU daily COVID-19 cases and deaths rates from all states — covid_case_death_rates_extended","text":"object contains modified part COVID-19 Data Repository Center Systems Science Engineering (CSSE) Johns Hopkins University republished COVIDcast Epidata API. data set licensed terms Creative Commons Attribution 4.0 International license Johns Hopkins University behalf Center Systems Science Engineering. Copyright Johns Hopkins University 2020. Modifications: COVIDcast Epidata API: signals taken directly JHU CSSE COVID-19 GitHub repository without changes. 7-day average signals computed Delphi calculating moving averages preceding 7 days, signal June 7 average underlying data June 1 7, inclusive.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/covid_case_death_rates_extended.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"JHU daily COVID-19 cases and deaths rates from all states — covid_case_death_rates_extended","text":"used epiprocess correlation vignettes.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/covid_case_death_rates_extended.html","id":"data-dictionary","dir":"Reference","previous_headings":"","what":"Data dictionary","title":"JHU daily COVID-19 cases and deaths rates from all states — covid_case_death_rates_extended","text":"data columns: geo_value geographic value associated row measurements. time_value time value associated row measurements. case_rate 7-day average signal number new confirmed COVID-19 cases per 100,000 population, daily death_rate 7-day average signal number new confirmed deaths due COVID-19 per 100,000 population, daily","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/covid_confirmed_cumulative_num.html","id":null,"dir":"Reference","previous_headings":"","what":"Subset of COVID-19 cumulative case counts from 4 states — covid_confirmed_cumulative_num","title":"Subset of COVID-19 cumulative case counts from 4 states — covid_confirmed_cumulative_num","text":"Data set 4 states containing COVID-19 Cumulative Cases reported JHU-CSSE downloaded CMU Delphi COVIDcast Epidata API. example data snapshot March 20, 2024, ranges March 1, 2020 January 31, 2022. limited California, Florida, New York, Texas. used epiprocess \"Getting Started\" vignette.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/covid_confirmed_cumulative_num.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Subset of COVID-19 cumulative case counts from 4 states — covid_confirmed_cumulative_num","text":"","code":"covid_confirmed_cumulative_num"},{"path":"https://cmu-delphi.github.io/epidatasets/reference/covid_confirmed_cumulative_num.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Subset of COVID-19 cumulative case counts from 4 states — covid_confirmed_cumulative_num","text":"tibble::tibble (object class c(\"tbl_df\", \"tbl\", \"data.frame\")) 2808 rows 15 columns.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/covid_confirmed_cumulative_num.html","id":"source","dir":"Reference","previous_headings":"","what":"Source","title":"Subset of COVID-19 cumulative case counts from 4 states — covid_confirmed_cumulative_num","text":"object contains modified part COVID-19 Data Repository Center Systems Science Engineering (CSSE) Johns Hopkins University republished COVIDcast Epidata API. data set licensed terms Creative Commons Attribution 4.0 International license Johns Hopkins University behalf Center Systems Science Engineering. Copyright Johns Hopkins University 2020. Modifications: COVIDcast Epidata API: signals taken directly JHU CSSE COVID-19 GitHub repository without changes. Furthermore, data limited small number rows, formatted epi_df, signal names slightly altered.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/covid_confirmed_cumulative_num.html","id":"data-dictionary","dir":"Reference","previous_headings":"","what":"Data dictionary","title":"Subset of COVID-19 cumulative case counts from 4 states — covid_confirmed_cumulative_num","text":"data columns: geo_value geographic value associated row measurements. signal name metric, derived upstream data. source name upstream data source. geo_type spatial resolution signal. time_type temporal resolution signal. time_value time value associated row measurements. issue time unit (e.g., date) signal data published. lag time delta (e.g. days) underlying events happened data published. missing_value integer code zero value field present non-zero data missing (see missing codes). missing_stderr integer code zero stderr field present non-zero data missing (see missing codes). missing_sample_size integer code zero sample_size field present non-zero data missing (see missing codes). value cumulative number confirmed COVID-19 cases, derived underlying data source. stderr approximate standard error statistic respect sampling distribution, NA applicable. sample_size number “data points” used computing statistic, NA applicable.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/covid_incidence_county_subset.html","id":null,"dir":"Reference","previous_headings":"","what":"Subset of JHU daily COVID-19 cases from counties in Massachusetts and Vermont — covid_incidence_county_subset","title":"Subset of JHU daily COVID-19 cases from counties in Massachusetts and Vermont — covid_incidence_county_subset","text":"data source confirmed COVID-19 cases deaths based reports made available Center Systems Science Engineering Johns Hopkins University. example data snapshot March 20, 2024, ranges March 1, 2020 December 31, 2021. limited counties Massachusetts Vermont. used epiprocess aggregation vignette.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/covid_incidence_county_subset.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Subset of JHU daily COVID-19 cases from counties in Massachusetts and Vermont — covid_incidence_county_subset","text":"","code":"covid_incidence_county_subset"},{"path":"https://cmu-delphi.github.io/epidatasets/reference/covid_incidence_county_subset.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Subset of JHU daily COVID-19 cases from counties in Massachusetts and Vermont — covid_incidence_county_subset","text":"epiprocess::epi_df (object class c(\"epi_df\", \"tbl_df\", \"tbl\", \"data.frame\")) 16212 rows 5 columns.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/covid_incidence_county_subset.html","id":"source","dir":"Reference","previous_headings":"","what":"Source","title":"Subset of JHU daily COVID-19 cases from counties in Massachusetts and Vermont — covid_incidence_county_subset","text":"object contains modified part COVID-19 Data Repository Center Systems Science Engineering (CSSE) Johns Hopkins University republished COVIDcast Epidata API. data set licensed terms Creative Commons Attribution 4.0 International license Johns Hopkins University behalf Center Systems Science Engineering. Copyright Johns Hopkins University 2020. Modifications: COVIDcast Epidata API: signals taken directly JHU CSSE COVID-19 GitHub repository without changes. 7-day average signals computed Delphi moving averages preceding 7 days, signal June 7 average underlying data June 1 7, inclusive. Furthermore, data limited small number rows, formatted epi_df, signal names slightly altered.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/covid_incidence_county_subset.html","id":"data-dictionary","dir":"Reference","previous_headings":"","what":"Data dictionary","title":"Subset of JHU daily COVID-19 cases from counties in Massachusetts and Vermont — covid_incidence_county_subset","text":"data columns: geo_value geographic value associated row measurements. time_value time value associated row measurements. cases Number new confirmed COVID-19 cases, daily county_name name county state_name full name state","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/covid_incidence_outliers.html","id":null,"dir":"Reference","previous_headings":"","what":"Subset of JHU daily COVID-19 cases from New Jersey and Florida — covid_incidence_outliers","title":"Subset of JHU daily COVID-19 cases from New Jersey and Florida — covid_incidence_outliers","text":"data source confirmed COVID-19 cases based reports made available Center Systems Science Engineering Johns Hopkins University. example data downloaded CMU Delphi COVIDcast Epidata API. snapshot October 28, 2021, captures cases June 1, 2020 May 31, 2021. limited New Jersey Florida. data set used epiprocess vignette outliers.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/covid_incidence_outliers.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Subset of JHU daily COVID-19 cases from New Jersey and Florida — covid_incidence_outliers","text":"","code":"covid_incidence_outliers"},{"path":"https://cmu-delphi.github.io/epidatasets/reference/covid_incidence_outliers.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Subset of JHU daily COVID-19 cases from New Jersey and Florida — covid_incidence_outliers","text":"epiprocess::epi_df (object class c(\"epi_df\", \"tbl_df\", \"tbl\", \"data.frame\")) 730 rows 3 columns.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/covid_incidence_outliers.html","id":"source","dir":"Reference","previous_headings":"","what":"Source","title":"Subset of JHU daily COVID-19 cases from New Jersey and Florida — covid_incidence_outliers","text":"object contains modified part COVID-19 Data Repository Center Systems Science Engineering (CSSE) Johns Hopkins University republished COVIDcast Epidata API. data set licensed terms Creative Commons Attribution 4.0 International license Johns Hopkins University behalf Center Systems Science Engineering. Copyright Johns Hopkins University 2020. Modifications: COVIDcast Epidata API: signals taken directly JHU CSSE COVID-19 GitHub repository without changes. Furthermore, data limited small number rows, formatted epi_df, signal names slightly altered.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/covid_incidence_outliers.html","id":"data-dictionary","dir":"Reference","previous_headings":"","what":"Data dictionary","title":"Subset of JHU daily COVID-19 cases from New Jersey and Florida — covid_incidence_outliers","text":"data columns: geo_value geographic value associated row measurements. time_value time value associated row measurements. cases Number new confirmed COVID-19 cases, daily","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/ctis_covid_behaviours.html","id":null,"dir":"Reference","previous_headings":"","what":"Subset of CTIS COVID-19-related behaviours from 5 states — ctis_covid_behaviours","title":"Subset of CTIS COVID-19-related behaviours from 5 states — ctis_covid_behaviours","text":"Data set handful states masking distancing behaviours COVID-19 Pandemic, downloaded CMU Delphi COVIDcast Epidata API. example data snapshot March 20, 2024, ranges June 4, 2021 December 31, 2021. limited California, Florida, Texas, New Jersey, New York.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/ctis_covid_behaviours.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Subset of CTIS COVID-19-related behaviours from 5 states — ctis_covid_behaviours","text":"","code":"ctis_covid_behaviours"},{"path":"https://cmu-delphi.github.io/epidatasets/reference/ctis_covid_behaviours.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Subset of CTIS COVID-19-related behaviours from 5 states — ctis_covid_behaviours","text":"epiprocess::epi_df (object class c(\"epi_df\", \"tbl_df\", \"tbl\", \"data.frame\")) 1055 rows 4 columns.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/ctis_covid_behaviours.html","id":"source","dir":"Reference","previous_headings":"","what":"Source","title":"Subset of CTIS COVID-19-related behaviours from 5 states — ctis_covid_behaviours","text":"object contains modified part data aggregations API prepared COVID-19 Trends Impact Survey; see first link information citing publications. data made available via Delphi Epidata API. aggregations licensed terms Creative Commons Attribution license. Modifications: data limited small number rows, signal names slightly altered, formatted epi_df.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/ctis_covid_behaviours.html","id":"data-dictionary","dir":"Reference","previous_headings":"","what":"Data dictionary","title":"Subset of CTIS COVID-19-related behaviours from 5 states — ctis_covid_behaviours","text":"data columns: geo_value geographic value associated row measurements. time_value time value associated row measurements. masking Estimated percentage people wore mask time public past 7 days; public past 7 days counted. distancing Estimated percentage respondents reported people encountered public past 7 days maintained distance least 6 feet. Respondents said public past 7 days excluded.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/grad_employ_subset.html","id":null,"dir":"Reference","previous_headings":"","what":"Subset of Statistics Canada median employment income for postsecondary graduates — grad_employ_subset","title":"Subset of Statistics Canada median employment income for postsecondary graduates — grad_employ_subset","text":"Data set territories (aggregated) 10 provinces containing yearly income data postsecondary graduates reported Statistics Canada, downloaded Statistics Canada website www.statcan.gc.ca. example data snapshot September 18, 2024, ranges 2010 2017 (yearly).","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/grad_employ_subset.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Subset of Statistics Canada median employment income for postsecondary graduates — grad_employ_subset","text":"","code":"grad_employ_subset"},{"path":"https://cmu-delphi.github.io/epidatasets/reference/grad_employ_subset.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Subset of Statistics Canada median employment income for postsecondary graduates — grad_employ_subset","text":"epiprocess::epi_df (object class c(\"epi_df\", \"tbl_df\", \"tbl\", \"data.frame\")) 1445 rows 7 columns.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/grad_employ_subset.html","id":"source","dir":"Reference","previous_headings":"","what":"Source","title":"Subset of Statistics Canada median employment income for postsecondary graduates — grad_employ_subset","text":"object contains modified data adapted Statistics Canada, Table 37-10-0115-01 Characteristics median employment income longitudinal cohorts postsecondary graduates two five years graduation, educational qualification field study (primary groupings). constitute endorsement Statistics Canada product. data licensed terms Statistics Canada Open License. Modifications: provincial territorial regions kept. age group, field study, educational qualification kept covariates. remaining covariates, keep aggregated values drop level-specific rows. modifications made time range data.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/grad_employ_subset.html","id":"data-dictionary","dir":"Reference","previous_headings":"","what":"Data dictionary","title":"Subset of Statistics Canada median employment income for postsecondary graduates — grad_employ_subset","text":"data columns: geo_value province Canada associated row measurements. time_value time value, year integer YYYY format edu_qual education qualification age_group age group; either 15 34 35 64 num_graduates number graduates given row characteristics med_income_2y median employment income two years graduation med_income_5y median employment income five years graduation","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/state_census.html","id":null,"dir":"Reference","previous_headings":"","what":"State population data — state_census","title":"State population data — state_census","text":"Data set state populations, 2019 US Census.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/state_census.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"State population data — state_census","text":"","code":"state_census"},{"path":"https://cmu-delphi.github.io/epidatasets/reference/state_census.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"State population data — state_census","text":"tibble::tibble (object class c(\"tbl_df\", \"tbl\", \"data.frame\")) 57 rows 4 columns.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/state_census.html","id":"source","dir":"Reference","previous_headings":"","what":"Source","title":"State population data — state_census","text":"object derived several datasets United States Census Bureau, Population Division, https://www2.census.gov/programs-surveys/popest/datasets/2010-2019/counties/totals/co-est2019-alldata.pdf, https://www.census.gov/data/tables/time-series/demo/popest/2010s-total-puerto-rico-municipios.html, https://www.census.gov/data/tables/2010/dec/2010-island-areas.html. made available covidcast package. data public domain.","code":""},{"path":"https://cmu-delphi.github.io/epidatasets/reference/state_census.html","id":"data-dictionary","dir":"Reference","previous_headings":"","what":"Data dictionary","title":"State population data — state_census","text":"data includes 57 regions (US states, United States whole, District Columbia, Puerto Rico Commonwealth, American Samoa, Guam, U.S. Virgin Islands, Northern Mariana Islands) columns: fips 2-digit FIPS code name Full name state territory pop Estimate location's resident population 2019. abbr Postal abbreviation location","code":""}] diff --git a/sitemap.xml b/sitemap.xml index c087548..de51d0e 100644 --- a/sitemap.xml +++ b/sitemap.xml @@ -4,16 +4,20 @@ https://cmu-delphi.github.io/epidatasets/authors.html https://cmu-delphi.github.io/epidatasets/index.html https://cmu-delphi.github.io/epidatasets/reference/archive_cases_dv_subset.html +https://cmu-delphi.github.io/epidatasets/reference/archive_cases_dv_subset_all_states.html https://cmu-delphi.github.io/epidatasets/reference/can_prov_cases.html +https://cmu-delphi.github.io/epidatasets/reference/case_death_rate_archive.html https://cmu-delphi.github.io/epidatasets/reference/cases_deaths_subset.html https://cmu-delphi.github.io/epidatasets/reference/counts_subset.html +https://cmu-delphi.github.io/epidatasets/reference/county_smoothed_cli_comparison.html https://cmu-delphi.github.io/epidatasets/reference/covid_case_death_rates.html +https://cmu-delphi.github.io/epidatasets/reference/covid_case_death_rates_extended.html +https://cmu-delphi.github.io/epidatasets/reference/covid_confirmed_cumulative_num.html https://cmu-delphi.github.io/epidatasets/reference/covid_incidence_county_subset.html https://cmu-delphi.github.io/epidatasets/reference/covid_incidence_outliers.html https://cmu-delphi.github.io/epidatasets/reference/ctis_covid_behaviours.html https://cmu-delphi.github.io/epidatasets/reference/grad_employ_subset.html https://cmu-delphi.github.io/epidatasets/reference/index.html -https://cmu-delphi.github.io/epidatasets/reference/jhu_confirmed_cumulative_num.html https://cmu-delphi.github.io/epidatasets/reference/state_census.html