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RecurrentMutationStats
RecurrentMutationStats PublicThis contains code for statistical analysis of recurrent mutations in whole genome sequencing data.
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RegulomeDBAutomatedDownload
RegulomeDBAutomatedDownload PublicThis repository contains code to enable automate the downloading of RegulomeDB annotations from a tsv source file.
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DynamicDiskCloudSoftware
DynamicDiskCloudSoftware PublicThis software is designed to run genomics workflows on the Google Compute Engine. The distinguishing characteristic of this software is that it is designed to automatically mount and unmount disk s…
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MismappingAnalysis
MismappingAnalysis PublicThis project is intended to help researchers identify single nucleotide variants that could have been falsely called as variants due to mapping errors. It utilizes BLAT to identify homologous regio…
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CloudStartupScriptWrapper
CloudStartupScriptWrapper PublicThis is a python program designed for running startup/shutdown scripts on a compute instance. It is particularly useful for logging outputs of multiple commands as well as logging system cpu, memor…
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SCGCancerPipeline
SCGCancerPipeline PublicSoftware to run a cancer pipeline on the Stanford Cluster (can be generalized to any cluster that operates via drmaa.
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