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  1. RecurrentMutationStats RecurrentMutationStats Public

    This contains code for statistical analysis of recurrent mutations in whole genome sequencing data.

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    This project is intended to help researchers identify single nucleotide variants that could have been falsely called as variants due to mapping errors. It utilizes BLAT to identify homologous regio…

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    This is a python program designed for running startup/shutdown scripts on a compute instance. It is particularly useful for logging outputs of multiple commands as well as logging system cpu, memor…

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  6. SCGCancerPipeline SCGCancerPipeline Public

    Software to run a cancer pipeline on the Stanford Cluster (can be generalized to any cluster that operates via drmaa.

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