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Sketch of the design #1

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mr-c opened this issue Sep 5, 2019 · 2 comments

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mr-c commented Sep 5, 2019

No description provided.

cmungall commented Sep 5, 2019

This will convert a Makefile to XML https://github.com/lindenb/xml-patch-make

It appears to ground the program, i.e. replace wildcards with ground values.

The resulting XML is converted to CWL via XSLT
https://github.com/lindenb/xml-patch-make/blob/master/stylesheets/graph2cwl.xsl

Example of usage
https://github.com/bcgsc/tigmint/blob/bf3b837da994e56341467ef131406b5c2cdf5d7c/Makefile#L76-L77

cmungall commented Sep 5, 2019

xml-patch-make doesn't compile on OS X, trying in Docker now

cmungall mentioned this issue

add Dockerfile to build xml-make lindenb/xml-patch-make#10

Merged

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