diff --git a/ms2rescore/gui/app.py b/ms2rescore/gui/app.py
index a077a45..50f8451 100644
--- a/ms2rescore/gui/app.py
+++ b/ms2rescore/gui/app.py
@@ -383,6 +383,9 @@ def get(self) -> Dict:
             config["deeplc"] = deeplc_config
         if ionmob_enabled:
             config["ionmob"] = ionmob_config
+        if im2deep_enabled:
+            config["im2deep"] = im2deep_config
+
         return config