From 4ee55c5146a3963eb944cab0611d1ddd06a57e6c Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?=C3=81ine=20O=27Toole?= Date: Wed, 29 Apr 2020 17:09:03 +0100 Subject: [PATCH] Update README.md --- README.md | 16 ++++++++-------- 1 file changed, 8 insertions(+), 8 deletions(-) diff --git a/README.md b/README.md index c9c6659..d994520 100644 --- a/README.md +++ b/README.md @@ -63,14 +63,14 @@ Your output will be a csv file with taxon name and lineage assigned, one line co Example: -| Taxon | Lineage | aLRT | UFbootstrap | status | note | -| ----------- |:---------:|:----------:|:----------:| :----------:| :----------:| -| Virus1 | B.1 | 80 | 82 | success | | -| Virus2 | A.1 | 65 | 95 | success | | -| Virus3 | A.3 | 100 | 100 | success | | -| Virus4 | B.1.4 | 82 | 73 | success | | -| Virus5 | None | 0 | 0 | fail | N_content:0.80 | -| Virus6 | None | 0 | 0 | fail | seq_len:0 | +| Taxon | Lineage | aLRT | UFbootstrap | lineages_version |status | note | +| ----------- |:---------:|:----------:|:----------:| :----------:|:----------:| :----------:| +| Virus1 | B.1 | 80 | 82 | 2020-04-27 | passed_qc | | +| Virus2 | A.1 | 65 | 95 | 2020-04-27 | passed_qc | | +| Virus3 | A.3 | 100 | 100 | 2020-04-27 | passed_qc | | +| Virus4 | B.1.4 | 82 | 73 | 2020-04-27 | passed_qc | | +| Virus5 | None | 0 | 0 | 2020-04-27 | fail | N_content:0.80 | +| Virus6 | None | 0 | 0 | 2020-04-27 | fail | seq_len:0 | Resources for interpreting the aLRT and UFbootstrap output can be found [here](http://www.iqtree.org/doc/Tutorial#assessing-branch-supports-with-single-branch-tests) and [here](http://www.iqtree.org/doc/Command-Reference).