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MD5
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MD5
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655a5041fc66443004735d9319e175a3 *DESCRIPTION
91a8fe5bcefbaab1cd0921148631c6de *NAMESPACE
b1e43a1bb1768f39b53a67134f3ebb6c *NEWS.md
e7c23f13ee6af763f1fb0e93981097bd *R/A_selected.R
bd0beaa6e4559aad5a7a3f0edb953f88 *R/AngGym.R
b2eaea58df2591c2b0ff98c462610f37 *R/agf.R
eba4d2a2d33a8518efea89698c820d6d *R/ancillary.R
92db3e6e4a14841ffcb2222a0c3141b1 *R/orth.R
d24f4ae65cf4eecf56cb3fb95abd826d *R/parseRec.R
e2a0119c36eb591f6e35da0ece8c3615 *R/sdf.R
08d3728ea83479fc2cfc5902ead64f1e *R/selected_tr.R
6827d31a6eccd2751205b20d997efec9 *README.md
f50b6fac2e0b0e14f5c31816090c624c *build/vignette.rds
7b26105230438452d6891d99950e6f98 *data/A_selected.rda
3e8f6a80960bf71a308dd14aaab0b129 *data/AngGym.rda
c493977cd1ea23f113dfe7c0c3ec8c57 *data/agf.rda
7706c70e833da716e3f102c8038ce374 *data/sdf.rda
c9c12b4c390f2d97a5b0abe38c5505d3 *data/selected_tr.rda
996199bf7d303c8104d26780e11fcb54 *inst/doc/Performing_Sequence_Alignment_in_R.R
943669b93dbf60172465ba1e6e568a04 *inst/doc/Performing_Sequence_Alignment_in_R.Rmd
b824b97410bac75fd9959a0500187c04 *inst/doc/Performing_Sequence_Alignment_in_R.html
3ff2cab44442a6ab3f96592ebd0dfff3 *inst/doc/Searching_for_Orthologous.R
cf25f625d49d2a5bda8f6534742a8099 *inst/doc/Searching_for_Orthologous.Rmd
506f3d3bc2c879133e2de34bad9442bb *inst/doc/Searching_for_Orthologous.html
06912894faf5778932bbc5b1f35ba2d3 *inst/doc/Unraveling_the_hiden_paralogous.R
89abecbc2814d73c7210b04bca1e29cb *inst/doc/Unraveling_the_hiden_paralogous.Rmd
9aff5c40658a367eea99c56725969eb4 *inst/doc/Unraveling_the_hiden_paralogous.html
92364a8366c20d4d56b56a4427e3a9b9 *inst/extdata/README.txt
c1e2d1c2e264c5dfe15d118b18fd1309 *inst/extdata/conifers
6c5856fe1b1fe56b6f6adce04e323da0 *inst/extdata/gymnosperms
6f1346b951891943aea0b77b3c0159ab *inst/extdata/representatives
283cdb8320ed5cb6f3de910c3d3a602f *inst/extdata/selected
bf1408ca96247b9d47db0303325b305a *man/A_selected.Rd
84bb8c0fda4c1b6f7bbf25b7c69c590b *man/AngGym.Rd
9b57639e4e22fef21e82117730401c77 *man/agf.Rd
a5169d05ee0424e6b45c16d8704062b1 *man/coltips.Rd
b000c81f8ea917ee8fe212795fe4809a *man/gapless_msa.Rd
0931f3287c3c4d9451f61ddca09bac37 *man/getseqGS.Rd
d58d775e9cb9d5a7b219e01aa93c5aef *man/madRoot.Rd
f6d8a1dd505ae70d3956dee195497847 *man/mapTrees.Rd
ed75e924976e42ecfd309895b5492a31 *man/mltree.Rd
2bc0b112faee47bd919bd430fb8f84e3 *man/msa.Rd
3efa1f5c2b995a00c793b5ffa6196fb0 *man/orthG.Rd
de5429151178aa7be12f5da5c4fc8a37 *man/orthP.Rd
69e7d1550715da883fe0065f2d36a333 *man/sdf.Rd
e3856c1f82124f69049fe9610562aaa4 *man/selected_tr.Rd
fb323b1255e9130bfad905c9700d07b7 *man/speciesGS.Rd
b9f3add81f04a8cc8e51a1056705df09 *man/subsetGS.Rd
9376bff63fe8b6f30afd559f63f70772 *tests/testthat.R
26e955bd4e6426842273710912ff2904 *tests/testthat/Rplots.pdf
db64604cbcfbc8673121f68d958f4842 *tests/testthat/data_t/rbl.txt
6f1346b951891943aea0b77b3c0159ab *tests/testthat/data_t/representatives1
f8e4416b796d198879e48b59e03ee52c *tests/testthat/test_ancillary.R
91818220fc585453d1aaf12d669cbf2a *tests/testthat/test_orth.R
58d7b3c43a2439808f0221231c81e91b *tests/testthat/test_parseRec.R
dd43bacc98f9f73b133a808cf0250890 *vignettes/Figures/GS1a_conif.png
8c5a3d1b7f89fb05a5752aa1e36a53f0 *vignettes/Figures/GS1a_network.png
4fc14dae12ff6c46dea3d578877fe089 *vignettes/Figures/GS1a_pinales.png
e423ab04f77bfe77ca5c983b4a2e1ba7 *vignettes/Figures/RecPinales.png
fa898b9693a91710f2aa382b493364eb *vignettes/Figures/ZmAth.png
e27874dcf8ea7e76f57972b0ee9d4dbe *vignettes/Figures/ZmAthG.png
2dc65edb516f18b709b1be5729ce4402 *vignettes/Figures/ZmAthOsaG.png
d944f5a641cdad31b3fda7eb58a42200 *vignettes/Figures/conif_ptr.png
3f8d05627998c05b227f3c006a583db5 *vignettes/Figures/conif_str.png
bb10c0fb9d056b921ef9ac9ff76b65fb *vignettes/Figures/orthTree.png
2589723afc7a80397ecbaa82b019ecff *vignettes/Figures/orth_vs_par.png
2fd2efbdac45ee469702bc0f27b2a48c *vignettes/Figures/outparalogs.png
943669b93dbf60172465ba1e6e568a04 *vignettes/Performing_Sequence_Alignment_in_R.Rmd
cf25f625d49d2a5bda8f6534742a8099 *vignettes/Searching_for_Orthologous.Rmd
89abecbc2814d73c7210b04bca1e29cb *vignettes/Unraveling_the_hiden_paralogous.Rmd