NAMESPACE

# Generated by roxygen2: do not edit by hand

export(coltips)
export(gapless_msa)
export(getseqGS)
export(madRoot)
export(mapTrees)
export(mltree)
export(msa)
export(orthG)
export(orthP)
export(speciesGS)
export(subsetGS)
importFrom(TreeTools,Preorder)
importFrom(TreeTools,Subtree)
importFrom(ape,dist.aa)
importFrom(ape,dist.nodes)
importFrom(ape,drop.tip)
importFrom(ape,getMRCA)
importFrom(ape,is.binary)
importFrom(ape,is.rooted)
importFrom(ape,multi2di)
importFrom(ape,nj)
importFrom(ape,read.tree)
importFrom(ape,unroot)
importFrom(ape,write.tree)
importFrom(bio3d,seqaln)
importFrom(bio3d,seqbind)
importFrom(bio3d,write.fasta)
importFrom(castor,get_pairwise_mrcas)
importFrom(igraph,as_data_frame)
importFrom(igraph,graph_from_adjacency_matrix)
importFrom(phangorn,as.phyDat)
importFrom(phangorn,optim.pml)
importFrom(phangorn,pml)
importFrom(phytools,reroot)
importFrom(seqinr,read.fasta)
importFrom(seqinr,translate)
importFrom(stats,sd)
importFrom(utils,data)