diff --git a/CHANGELOG b/CHANGELOG index 9af53c3..7400e6d 100644 --- a/CHANGELOG +++ b/CHANGELOG @@ -1,5 +1,21 @@ +CHANGELOG +========= + +2018-10-15 v0.15.5 + + * Update badges in README (Taeber Rapczak) + * Merge pull request #230 from PFWhite/feature/rediRunDebugDocs (Christopher P. Barnes) + * Update redi-run-debug.md (Patrick White) + * added docs for debuging redi runs (Patrick White) + * Update README-example-files.md (Michael Buchholz) + * Improve configuration examples for use in vagrant installs (Roy Keyes) + * Merge pull request #212 from ctsit/develop (Nicholas Rejack) + * Merge pull request #211 from nrejack/fix_getemrdata_unittest (Nicholas Rejack) + * Fixing broken unittest TestGetEMRData. Skipping problematic test. See issue #210. (Nicholas Rejack) + + 2016-07-12 v0.15.4 - + * Updating .gitignore. (Nicholas Rejack) * Adding new test to verify behavior when keep_all_events is set to True. (Nicholas Rejack) * Adding new logic to properly update event tree when keep_all_events is True. (Nicholas Rejack) @@ -9,6 +25,7 @@ * Adding setuptools_scm to install_requires in setup.py. (Nicholas Rejack) * fixed merge messages left in TODO (Christopher Barnes) + 2016-05-19 v0.15.3 * modify TestSortElementTree to test for new commandline switch for keeping all results that bypasses the compress events functions (Christopher Barnes) @@ -47,6 +64,7 @@ * cleanup -K keep all switch (Christopher Barnes) * add switch to keep all results (Christopher Barnes) + 2016-03-17 v0.15.2 * Summary: Hotfix to fix logging behavior when input file is not present. @@ -54,6 +72,7 @@ * Fixing check for input file in redi.py. Now log the file's location only if it's there. (Nicholas Rejack) * Update README.md (Nicholas Rejack) + 2016-03-17 v0.15.1 * Summary: RED-I now accepts a file as input from the command line, using -f FILENAME. diff --git a/README.md b/README.md index a123176..eecba29 100644 --- a/README.md +++ b/README.md @@ -1,12 +1,10 @@ RED-I Project ============= -10.5281/zenodo.47793 +[![10.5281/zenodo.47793](https://zenodo.org/badge/4064/ctsit/redi.svg)](http://ufl.to/ctsit) [![Travis CI](https://api.travis-ci.org/ctsit/redi.svg?branch=master)](https://api.travis-ci.org/ctsit/redi.svg?branch=master) -[![Version](https://pypip.in/v/redi/badge.png)](https://pypip.in/v/redi/badge.png) -[![Coverage Status Master](https://coveralls.io/repos/ctsit/redi/badge.svg?branch=master)](https://coveralls.io/r/ctsit/redi?branch=master) -[![Coverage Status Develop](https://coveralls.io/repos/ctsit/redi/badge.svg?branch=develop)](https://coveralls.io/r/ctsit/redi?branch=develop) -[![Downloads](https://pypip.in/d/redi/badge.png)](https://pypip.in/d/redi/badge.png) +[![PyPI version](https://badge.fury.io/py/redi.svg)](https://badge.fury.io/py/redi) +[![Coverage Status Develop](https://coveralls.io/repos/ctsit/redi/badge.svg?branch=master)](https://coveralls.io/r/ctsit/redi?branch=master) Introduction @@ -25,8 +23,9 @@ investigator with feedback on upload success in the form of summary reporting of the data upload process. You can view a presentation of the RED-I tool in action on -[youtube](https://www.youtube.com/watch?v=0x04y5SNPL8&feature=youtu.be) +[youtube](https://www.youtube.com/watch?v=0x04y5SNPL8&feature=youtu.be). For the official documentation please refer to [http://redi.readthedocs.io](http://redi.readthedocs.io) or [RED-I Project](https://github.com/ctsit/redi/blob/master/docs/about.rst). + diff --git a/config-example.tgz b/config-example.tgz new file mode 100644 index 0000000..a076a18 Binary files /dev/null and b/config-example.tgz differ diff --git a/config-example/config-example.tgz b/config-example/config-example.tgz new file mode 100644 index 0000000..36fc913 Binary files /dev/null and b/config-example/config-example.tgz differ diff --git a/docs/redi-run-debug.md b/docs/redi-run-debug.md new file mode 100644 index 0000000..6f51ea7 --- /dev/null +++ b/docs/redi-run-debug.md @@ -0,0 +1,15 @@ +# So you didn't get the report? # + +## Steps to debug ## + +#### 1 check config.ini #### +If the email setting is False then it wont have emailed, the run may have worked. + +#### 2 check for reports #### +Go to the project root. Run `ls -alh`. See when things were modified. Check to see if there are new files added or changed a little after the run should have run. + +#### 3 Check the cron.d #### +Go and look at the files in `/etc/cron.d`. See if the command is scheduled to run at the time you think. + +#### 4 Check mail #### +When cron jobs error they send a local mail to the root user. The `redi` user is forwarded these mails. You can switch users to `redi` by running `sudo su - redi`. To view the mails use the `mutt` command. diff --git a/setup.py b/setup.py index 0d5318d..147e7c2 100644 --- a/setup.py +++ b/setup.py @@ -19,7 +19,7 @@ setup( name='redi', use_scm_version=True, - author='https://www.ctsi.ufl.edu/research/study-development/informatics-consulting/', + author='CTS-IT at the University of Florida', author_email='ctsit@ctsi.ufl.edu', packages=find_packages(exclude=['test']), include_package_data=True, @@ -27,7 +27,7 @@ 'redi': ['utils/*.xsl', 'utils/*.xsd'] }, url='https://github.com/ctsit/redi', - download_url = 'https://github.com/ctsit/redi/releases/tag/0.15.4', + download_url = 'https://github.com/ctsit/redi/releases/tag/0.15.5', keywords = ['EMR', 'EHR', 'REDCap', 'Clinical Data'], license='BSD 3-Clause', description='REDCap Electronic Data Importer',