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Modular single cell ingest #112

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gwaybio opened this issue Dec 14, 2020 · 1 comment
Open

Modular single cell ingest #112

gwaybio opened this issue Dec 14, 2020 · 1 comment
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enhancement New feature or request

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gwaybio commented Dec 14, 2020

As currently defined in aggregate.py, the class AggregateProfiles() works using SQLite files only.

We have added parquet functionality in cytomining/cytominer-database#122 and are finalizing the addition in cytomining/cytominer-database#130.

The task in this issue is to develop a cyto_utils.single_cell_ingest_utils.py file that will automatically detect file type and convert to a dataframe for easy processing in by cells.py in #111
@gwaybio gwaybio added the enhancement New feature or request label Dec 14, 2020
@gwaybio gwaybio mentioned this issue Dec 14, 2020
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@gwaybio gwaybio mentioned this issue Jan 7, 2021
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@d33bs d33bs mentioned this issue May 21, 2022
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gwaybio commented Jun 7, 2023

solution related to #120 #260 #206

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