Universal API implementations for Micro-Manager OME-TIFF and NDTiff #397
Workflow file for this run
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# This workflow will install Python dependencies, run tests and lint with a single version of Python | |
# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
name: lint, style, and tests | |
on: | |
pull_request: | |
branches: | |
- main | |
- unified-api | |
jobs: | |
style: | |
name: Style Check | |
runs-on: ubuntu-latest | |
strategy: | |
matrix: | |
python-version: ["3.10"] | |
steps: | |
- uses: actions/checkout@v3 | |
- name: Set up Python | |
uses: actions/setup-python@v4 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install dependencies | |
run: | | |
python -m pip install --upgrade pip | |
pip install black | |
- name: Check code styling with Black | |
run: | | |
black --diff -S -t py310 iohub | |
black --check -S -t py310 iohub | |
lint: | |
name: Lint Check | |
runs-on: ubuntu-latest | |
strategy: | |
matrix: | |
python-version: ["3.10"] | |
steps: | |
- uses: actions/checkout@v3 | |
- name: Set up Python | |
uses: actions/setup-python@v4 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install dependencies | |
run: | | |
python -m pip install --upgrade pip | |
pip install flake8 | |
- name: Check code with Flake8 | |
# E203 conflicts with black | |
run: | | |
flake8 iohub --extend-ignore=E203 | |
isort: | |
name: isort Check | |
runs-on: ubuntu-latest | |
strategy: | |
matrix: | |
python-version: ["3.10"] | |
steps: | |
- uses: actions/checkout@v3 | |
- name: Set up Python | |
uses: actions/setup-python@v4 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install dependencies | |
run: | | |
python -m pip install --upgrade pip | |
pip install isort | |
- name: Check code with isort | |
run: | | |
isort --check iohub | |
tests: | |
needs: [style, lint, isort] | |
runs-on: ubuntu-latest | |
strategy: | |
matrix: | |
python-version: ["3.10", "3.11", "3.12"] | |
steps: | |
- uses: actions/checkout@v3 | |
- uses: actions/setup-python@v4 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install dependencies | |
run: | | |
python -m pip install --upgrade pip | |
pip install ".[dev]" | |
- name: Test with pytest | |
run: | | |
pytest -v --cov=./ --cov-report=xml | |
# this checks that docs build and examples run | |
# but does not deploy to GH Pages | |
docs: | |
needs: [style, lint, isort] | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v3 | |
- uses: actions/setup-python@v4 | |
with: | |
python-version: "3.10" | |
- name: Install dependencies | |
run: | | |
python -m pip install --upgrade pip | |
pip install ".[doc]" | |
- name: Test docs build | |
working-directory: ./docs | |
run: | | |
make build |