diff --git a/iohub/ndtiff.py b/iohub/ndtiff.py index 65e44e15..81969b67 100644 --- a/iohub/ndtiff.py +++ b/iohub/ndtiff.py @@ -35,7 +35,7 @@ def __init__(self, data_path: str): self.channel_names = list(self.dataset.get_channel_names()) self.stage_positions = self.mm_meta["Summary"]["StagePositions"] self.z_step_size = self.mm_meta["Summary"]["z-step_um"] - self.xy_pixel_size = self.mm_meta["Summary"]["PixelSize_um"] + self.xy_pixel_size = self.mm_meta["Summary"].get("PixelSize_um", 1.0) def _get_summary_metadata(self): pm_metadata = self.dataset.summary_metadata diff --git a/iohub/upti.py b/iohub/upti.py index 4eb29e8e..6cc3c212 100644 --- a/iohub/upti.py +++ b/iohub/upti.py @@ -10,7 +10,6 @@ class UPTIReader(ReaderBase): - """ Reader for UPTI raw data. Accepts both new live UPTI and older UPTI format. diff --git a/iohub/zarrfile.py b/iohub/zarrfile.py index 3ca03818..0689e99f 100644 --- a/iohub/zarrfile.py +++ b/iohub/zarrfile.py @@ -13,7 +13,6 @@ class ZarrReader(ReaderBase): - """ .. deprecated:: 0.0.1 `ZarrReader` will be removed in future iohub releases,