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Allow undefined pixel size for NDTiff #217

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Allow undefined pixel size for NDTiff #217

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4376e78
allow undefined pixelsize for ndtiff
ziw-liu Apr 6, 2024
5fee2d0
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ziw-liu Apr 6, 2024
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2 changes: 1 addition & 1 deletion iohub/ndtiff.py
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Expand Up @@ -35,7 +35,7 @@ def __init__(self, data_path: str):
self.channel_names = list(self.dataset.get_channel_names())
self.stage_positions = self.mm_meta["Summary"]["StagePositions"]
self.z_step_size = self.mm_meta["Summary"]["z-step_um"]
self.xy_pixel_size = self.mm_meta["Summary"]["PixelSize_um"]
self.xy_pixel_size = self.mm_meta["Summary"].get("PixelSize_um", 1.0)

def _get_summary_metadata(self):
pm_metadata = self.dataset.summary_metadata
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1 change: 0 additions & 1 deletion iohub/upti.py
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Expand Up @@ -10,7 +10,6 @@


class UPTIReader(ReaderBase):

"""
Reader for UPTI raw data.
Accepts both new live UPTI and older UPTI format.
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1 change: 0 additions & 1 deletion iohub/zarrfile.py
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Expand Up @@ -13,7 +13,6 @@


class ZarrReader(ReaderBase):

"""
.. deprecated:: 0.0.1
`ZarrReader` will be removed in future iohub releases,
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