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Implement pre-clustering steps within element-array-ephys #28

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5 of 6 tasks
kabilar opened this issue Apr 6, 2022 · 2 comments
Closed
5 of 6 tasks

Implement pre-clustering steps within element-array-ephys #28

kabilar opened this issue Apr 6, 2022 · 2 comments
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@kabilar
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kabilar commented Apr 6, 2022

Requirements

  • Handle multiple pre-clustering steps, including the order of operations.
  • Store list of pre-clustering steps with unique id downstream from parameter set table.
  • LFP downstream from pre-clustering
  • Allow for no pre-clustering
  • Under task_mode=trigger, update Clustering to look for CatGT results
  • Pre-clustering would run on a per probe basis.

Options

  1. Create additional tables downstream of EphysRecording.
  2. Overwrite the EphysRecording make function for SpikeGLX data.
    • Run pre-clustering (e.g. CatGT) within this modified make function.
    • Can assume certain file path.
    • Look for json with input parameters
@kabilar kabilar self-assigned this Apr 6, 2022
@kabilar
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kabilar commented Apr 20, 2022

Pull request datajoint/element-array-ephys#65

@kabilar kabilar changed the title Implement CatGT within element-array-ephys Implement pre-clustering steps within element-array-ephys Apr 20, 2022
kabilar pushed a commit to kabilar/braincogs-pipeline-python that referenced this issue May 12, 2022
Add recording and upstream ephys/imaging schema diagram
@kabilar
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kabilar commented Jun 2, 2022

The remaining item above is out of scope for the project needs and will be addressed in the future. See datajoint/element-array-ephys#76.

@kabilar kabilar closed this as completed Jun 2, 2022
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