Merge pull request #18 from kabilar/main

Update GitHub Actions and citation

.github/workflows/release.yaml

@@ -0,0 +1,19 @@
+name: Release
+on:
+  workflow_dispatch:
+jobs:
+  make_github_release:
+    uses: datajoint/.github/.github/workflows/make_github_release.yaml@main
+  pypi_release:
+    needs: make_github_release
+    uses: datajoint/.github/.github/workflows/pypi_release.yaml@main
+    secrets:
+      TWINE_USERNAME: ${{secrets.TWINE_USERNAME}}
+      TWINE_PASSWORD: ${{secrets.TWINE_PASSWORD}}
+    with:
+      UPLOAD_URL: ${{needs.make_github_release.outputs.release_upload_url}}
+  mkdocs_release:
+    uses: datajoint/.github/.github/workflows/mkdocs_release.yaml@main
+    permissions: 
+      contents: write
+

.github/workflows/test.yaml

@@ -0,0 +1,34 @@
+name: Test
+on:
+  push:
+  pull_request:
+  workflow_dispatch:
+  schedule:
+    - cron: "0 8 * * 1"
+jobs:
+  tests:
+    runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        py_ver: ["3.9", "3.10"]
+        mysql_ver: ["8.0", "5.7"]
+        include:
+          - py_ver: "3.8"
+            mysql_ver: "5.7"
+          - py_ver: "3.7"
+            mysql_ver: "5.7"
+    steps:
+      - uses: actions/checkout@v3
+      - name: Set up Python ${{matrix.py_ver}}
+        uses: actions/setup-python@v4
+        with:
+          python-version: ${{matrix.py_ver}}
+      - name: Install dependencies
+        run: |
+          python -m pip install --upgrade pip
+          pip install flake8 "black[jupyter]"
+      - name: Run style tests
+        run: |
+          python_version=${{matrix.py_ver}}
+          black element_zstack --check --verbose --target-version py${python_version//.}
+

CHANGELOG.md

@@ -3,6 +3,11 @@
 Observes [Semantic Versioning](https://semver.org/spec/v2.0.0.html) standard and
 [Keep a Changelog](https://keepachangelog.com/en/1.0.0/) convention.
 
+## [0.1.2] - 2023-07-28
+
++ Update - GitHub Actions with new reusable workflows
++ Add - BossDB citation
+
 ## [0.1.1] - 2023-05-22
 
 + Add - Cellpose citation
@@ -13,5 +18,6 @@ Observes [Semantic Versioning](https://semver.org/spec/v2.0.0.html) standard and
 + Add - `bossdb` schema
 + Add - Upload utilty to create resources and upload data to BossDB
 
+[0.1.2]: https://github.com/datajoint/element-zstack/releases/tag/0.1.2
 [0.1.1]: https://github.com/datajoint/element-zstack/releases/tag/0.1.1
 [0.1.0]: https://github.com/datajoint/element-zstack/releases/tag/0.1.0

docs/src/citation.md

@@ -3,11 +3,19 @@
 If your work uses the following resources, please cite the respective manuscript and/or Research Resource Identifier (RRID):
 
 + DataJoint Element ZStack - Version {{ PATCH_VERSION }}
-     + Yatsenko D, Nguyen T, Shen S, Gunalan K, Turner CA, Guzman R, Sasaki M, Sitonic D,
-     Reimer J, Walker EY, Tolias AS. DataJoint Elements: Data Workflows for
-     Neurophysiology. bioRxiv. 2021 Jan 1. doi: https://doi.org/10.1101/2021.03.30.437358
+  + Yatsenko D, Nguyen T, Shen S, Gunalan K, Turner CA, Guzman R, Sasaki M, Sitonic D,
+    Reimer J, Walker EY, Tolias AS. DataJoint Elements: Data Workflows for
+    Neurophysiology. bioRxiv. 2021 Jan 1. doi: https://doi.org/10.1101/2021.03.30.437358
 
-     + [RRID:SCR_021894](https://scicrunch.org/resolver/SCR_021894)
+  + [RRID:SCR_021894](https://scicrunch.org/resolver/SCR_021894)
 
 + Cellpose
-     + [Manuscripts](https://github.com/MouseLand/cellpose#citation)
+  + [Manuscripts](https://github.com/MouseLand/cellpose#citation)
+
++ Intern
+  + [Manuscript](https://bossdb.org/tools/intern)
+
++ BossDB
+  + [Manuscript](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8885591/)
+
+  + [RRID:SCR_017273](https://scicrunch.org/resolver/SCR_017273)

element_zstack/version.py

@@ -1,2 +1,2 @@
 """Package metadata."""
-__version__ = "0.1.1"
+__version__ = "0.1.2"