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Slower performance with larger number of threads on a big multiprocessor machine #279

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BrunoLevy opened this issue Nov 12, 2024 · 4 comments
Open

Slower performance with larger number of threads on a big multiprocessor machine #279

BrunoLevy opened this issue Nov 12, 2024 · 4 comments

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@BrunoLevy
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Hello,

I'm solving large systems (130 million x 130 million, approx 16 NNZs per row, P1 FEM for a Poisson-like equation)
on a big machine (4 CPUs Intel Xeon Gold 6240L, 18 cores/CPU, with hyperthreading, this makes 144 cores).
I am solving a series of linear systems (34 of them, it is a Newton iteration). I noticed that if I'm using all the
144 cores, performance is not as good as when using a limited number of cores (the optimum seems to be around 32 concurrent threads).

Is there a maximum recommended number of threads to use with AMGCL ?

Thank you in advance !

Running times with 144 threads

o-[Linear solve]    22 iters in 82.01 seconds 0 GFlop/s  ||Ax-b||/||b||=7.8568e-05
o-[Linear solve]    10 iters in 127.75 seconds 0 GFlop/s  ||Ax-b||/||b||=7.25841e-05
o-[Linear solve]    13 iters in 167.87 seconds 0 GFlop/s  ||Ax-b||/||b||=6.33273e-05
o-[Linear solve]    13 iters in 81.49 seconds 0 GFlop/s  ||Ax-b||/||b||=9.99431e-05
o-[Linear solve]    16 iters in 83.96 seconds 0 GFlop/s  ||Ax-b||/||b||=6.81104e-05
o-[Linear solve]    17 iters in 271.67 seconds 0 GFlop/s  ||Ax-b||/||b||=6.06977e-05
o-[Linear solve]    18 iters in 381.52 seconds 0 GFlop/s  ||Ax-b||/||b||=7.01995e-05
o-[Linear solve]    18 iters in 187.06 seconds 0 GFlop/s  ||Ax-b||/||b||=8.95339e-05
o-[Linear solve]    19 iters in 252.78 seconds 0 GFlop/s  ||Ax-b||/||b||=9.93522e-05
o-[Linear solve]    20 iters in 250.98 seconds 0 GFlop/s  ||Ax-b||/||b||=9.19154e-05
o-[Linear solve]    16 iters in 314.01 seconds 0 GFlop/s  ||Ax-b||/||b||=6.86911e-05
o-[Linear solve]    16 iters in 284.93 seconds 0 GFlop/s  ||Ax-b||/||b||=9.49837e-05
o-[Linear solve]    16 iters in 503.08 seconds 0 GFlop/s  ||Ax-b||/||b||=8.53771e-05
o-[Linear solve]    21 iters in 393.95 seconds 0 GFlop/s  ||Ax-b||/||b||=7.50488e-05
o-[Linear solve]    21 iters in 315.77 seconds 0 GFlop/s  ||Ax-b||/||b||=9.23609e-05
o-[Linear solve]    24 iters in 82.01 seconds 0 GFlop/s  ||Ax-b||/||b||=9.86193e-05
o-[Linear solve]    23 iters in 84.48 seconds 0 GFlop/s  ||Ax-b||/||b||=7.68229e-05
o-[Linear solve]    23 iters in 518.88 seconds 0 GFlop/s  ||Ax-b||/||b||=7.55897e-05
o-[Linear solve]    26 iters in 294.59 seconds 0 GFlop/s  ||Ax-b||/||b||=7.50017e-05
o-[Linear solve]    26 iters in 452.91 seconds 0 GFlop/s  ||Ax-b||/||b||=8.27896e-05
o-[Linear solve]    29 iters in 307.91 seconds 0 GFlop/s  ||Ax-b||/||b||=8.07129e-05
o-[Linear solve]    30 iters in 738.95 seconds 0 GFlop/s  ||Ax-b||/||b||=8.9117e-05
o-[Linear solve]    29 iters in 487.42 seconds 0 GFlop/s  ||Ax-b||/||b||=8.3026e-05
o-[Linear solve]    29 iters in 169.96 seconds 0 GFlop/s  ||Ax-b||/||b||=7.79059e-05
o-[Linear solve]    34 iters in 761.2 seconds 0 GFlop/s  ||Ax-b||/||b||=7.77524e-05
o-[Linear solve]    33 iters in 540.74 seconds 0 GFlop/s  ||Ax-b||/||b||=8.34394e-05
o-[Linear solve]    37 iters in 770.17 seconds 0 GFlop/s  ||Ax-b||/||b||=8.85991e-05
o-[Linear solve]    22 iters in 103.75 seconds 0 GFlop/s  ||Ax-b||/||b||=8.51125e-05
o-[Linear solve]    27 iters in 511.16 seconds 0 GFlop/s  ||Ax-b||/||b||=9.32069e-05
o-[Linear solve]    35 iters in 293.12 seconds 0 GFlop/s  ||Ax-b||/||b||=9.44283e-05
o-[Linear solve]    84 iters in 566.3 seconds 0 GFlop/s  ||Ax-b||/||b||=8.68865e-05
o-[Linear solve]    93 iters in 579.91 seconds 0 GFlop/s  ||Ax-b||/||b||=7.53275e-05
o-[Linear solve]    38 iters in 613.97 seconds 0 GFlop/s  ||Ax-b||/||b||=9.31847e-05
o-[Linear solve]    35 iters in 145.38 seconds 0 GFlop/s  ||Ax-b||/||b||=9.78387e-05
o-[Linear solve]    73 iters in 1307.2 seconds 0 GFlop/s  ||Ax-b||/||b||=8.12692e-05

Running times with 64 threads

o-[Linear solve]    22 iters in 107.72 seconds 0 GFlop/s  ||Ax-b||/||b||=7.8568e-05
o-[Linear solve]    10 iters in 88.31 seconds 0 GFlop/s  ||Ax-b||/||b||=7.25841e-05
o-[Linear solve]    13 iters in 124.47 seconds 0 GFlop/s  ||Ax-b||/||b||=6.33273e-05
o-[Linear solve]    13 iters in 150.9 seconds 0 GFlop/s  ||Ax-b||/||b||=9.99431e-05
o-[Linear solve]    16 iters in 288.14 seconds 0 GFlop/s  ||Ax-b||/||b||=6.81104e-05
o-[Linear solve]    17 iters in 151.65 seconds 0 GFlop/s  ||Ax-b||/||b||=6.06977e-05
o-[Linear solve]    18 iters in 152.54 seconds 0 GFlop/s  ||Ax-b||/||b||=7.01995e-05
o-[Linear solve]    18 iters in 330.22 seconds 0 GFlop/s  ||Ax-b||/||b||=8.95339e-05
o-[Linear solve]    19 iters in 152.76 seconds 0 GFlop/s  ||Ax-b||/||b||=9.93522e-05
o-[Linear solve]    20 iters in 87.05 seconds 0 GFlop/s  ||Ax-b||/||b||=9.19154e-05
o-[Linear solve]    16 iters in 194.89 seconds 0 GFlop/s  ||Ax-b||/||b||=6.86911e-05
o-[Linear solve]    16 iters in 265.67 seconds 0 GFlop/s  ||Ax-b||/||b||=9.49837e-05
o-[Linear solve]    16 iters in 298.82 seconds 0 GFlop/s  ||Ax-b||/||b||=8.53771e-05
o-[Linear solve]    21 iters in 183.34 seconds 0 GFlop/s  ||Ax-b||/||b||=7.50488e-05
o-[Linear solve]    21 iters in 89.42 seconds 0 GFlop/s  ||Ax-b||/||b||=9.23609e-05
o-[Linear solve]    24 iters in 176.19 seconds 0 GFlop/s  ||Ax-b||/||b||=9.86193e-05
o-[Linear solve]    23 iters in 120.3 seconds 0 GFlop/s  ||Ax-b||/||b||=7.68229e-05
o-[Linear solve]    23 iters in 96.84 seconds 0 GFlop/s  ||Ax-b||/||b||=7.55897e-05
o-[Linear solve]    26 iters in 294.83 seconds 0 GFlop/s  ||Ax-b||/||b||=7.50017e-05
o-[Linear solve]    26 iters in 517.7 seconds 0 GFlop/s  ||Ax-b||/||b||=8.27896e-05
o-[Linear solve]    29 iters in 456.25 seconds 0 GFlop/s  ||Ax-b||/||b||=8.07129e-05
o-[Linear solve]    30 iters in 177.95 seconds 0 GFlop/s  ||Ax-b||/||b||=8.9117e-05
o-[Linear solve]    29 iters in 245.04 seconds 0 GFlop/s  ||Ax-b||/||b||=8.3026e-05
o-[Linear solve]    29 iters in 99.87 seconds 0 GFlop/s  ||Ax-b||/||b||=7.79059e-05
o-[Linear solve]    34 iters in 130.31 seconds 0 GFlop/s  ||Ax-b||/||b||=7.77524e-05
o-[Linear solve]    33 iters in 114.76 seconds 0 GFlop/s  ||Ax-b||/||b||=8.34394e-05
o-[Linear solve]    37 iters in 327.9 seconds 0 GFlop/s  ||Ax-b||/||b||=8.85991e-05
o-[Linear solve]    22 iters in 110.32 seconds 0 GFlop/s  ||Ax-b||/||b||=8.51125e-05
o-[Linear solve]    27 iters in 509.96 seconds 0 GFlop/s  ||Ax-b||/||b||=9.32069e-05
o-[Linear solve]    35 iters in 97.31 seconds 0 GFlop/s  ||Ax-b||/||b||=9.44283e-05
o-[Linear solve]    84 iters in 366.19 seconds 0 GFlop/s  ||Ax-b||/||b||=8.68865e-05
o-[Linear solve]    93 iters in 705.1 seconds 0 GFlop/s  ||Ax-b||/||b||=7.53275e-05
o-[Linear solve]    38 iters in 535.45 seconds 0 GFlop/s  ||Ax-b||/||b||=9.31847e-05
o-[Linear solve]    35 iters in 232.96 seconds 0 GFlop/s  ||Ax-b||/||b||=9.77832e-05
o-[Linear solve]    73 iters in 189.8 seconds 0 GFlop/s  ||Ax-b||/||b||=8.12697e-05

Running times with 32 threads (best)

o-[Linear solve]    22 iters in 119.7 seconds 0 GFlop/s  ||Ax-b||/||b||=7.8568e-05
o-[Linear solve]    10 iters in 86.19 seconds 0 GFlop/s  ||Ax-b||/||b||=7.25841e-05
o-[Linear solve]    13 iters in 84.63 seconds 0 GFlop/s  ||Ax-b||/||b||=6.33273e-05
o-[Linear solve]    13 iters in 82.87 seconds 0 GFlop/s  ||Ax-b||/||b||=9.99431e-05
o-[Linear solve]    16 iters in 91.99 seconds 0 GFlop/s  ||Ax-b||/||b||=6.81104e-05
o-[Linear solve]    17 iters in 97.42 seconds 0 GFlop/s  ||Ax-b||/||b||=6.06977e-05
o-[Linear solve]    18 iters in 92.24 seconds 0 GFlop/s  ||Ax-b||/||b||=7.01995e-05
o-[Linear solve]    18 iters in 100.1 seconds 0 GFlop/s  ||Ax-b||/||b||=8.95339e-05
o-[Linear solve]    19 iters in 99.02 seconds 0 GFlop/s  ||Ax-b||/||b||=9.93522e-05
o-[Linear solve]    20 iters in 101.49 seconds 0 GFlop/s  ||Ax-b||/||b||=9.19154e-05
o-[Linear solve]    16 iters in 89.07 seconds 0 GFlop/s  ||Ax-b||/||b||=6.86911e-05
o-[Linear solve]    16 iters in 91.68 seconds 0 GFlop/s  ||Ax-b||/||b||=9.49837e-05
o-[Linear solve]    16 iters in 94.34 seconds 0 GFlop/s  ||Ax-b||/||b||=8.53771e-05
o-[Linear solve]    21 iters in 96.1 seconds 0 GFlop/s  ||Ax-b||/||b||=7.50488e-05
o-[Linear solve]    21 iters in 102.63 seconds 0 GFlop/s  ||Ax-b||/||b||=9.23609e-05
o-[Linear solve]    24 iters in 117.35 seconds 0 GFlop/s  ||Ax-b||/||b||=9.86193e-05
o-[Linear solve]    23 iters in 97.54 seconds 0 GFlop/s  ||Ax-b||/||b||=7.68229e-05
o-[Linear solve]    23 iters in 111.96 seconds 0 GFlop/s  ||Ax-b||/||b||=7.55897e-05
o-[Linear solve]    26 iters in 106.37 seconds 0 GFlop/s  ||Ax-b||/||b||=7.50017e-05
o-[Linear solve]    26 iters in 114.08 seconds 0 GFlop/s  ||Ax-b||/||b||=8.27896e-05
o-[Linear solve]    29 iters in 115.44 seconds 0 GFlop/s  ||Ax-b||/||b||=8.07129e-05
o-[Linear solve]    30 iters in 121.03 seconds 0 GFlop/s  ||Ax-b||/||b||=8.9117e-05
o-[Linear solve]    29 iters in 118.67 seconds 0 GFlop/s  ||Ax-b||/||b||=8.3026e-05
o-[Linear solve]    29 iters in 115.42 seconds 0 GFlop/s  ||Ax-b||/||b||=7.79059e-05
o-[Linear solve]    34 iters in 120.77 seconds 0 GFlop/s  ||Ax-b||/||b||=7.77524e-05
o-[Linear solve]    33 iters in 124.65 seconds 0 GFlop/s  ||Ax-b||/||b||=8.34394e-05
o-[Linear solve]    37 iters in 136.87 seconds 0 GFlop/s  ||Ax-b||/||b||=8.85991e-05
o-[Linear solve]    22 iters in 111.16 seconds 0 GFlop/s  ||Ax-b||/||b||=8.51125e-05
o-[Linear solve]    27 iters in 103.59 seconds 0 GFlop/s  ||Ax-b||/||b||=9.32069e-05
o-[Linear solve]    35 iters in 137.49 seconds 0 GFlop/s  ||Ax-b||/||b||=9.44283e-05
o-[Linear solve]    84 iters in 231.12 seconds 0 GFlop/s  ||Ax-b||/||b||=8.68865e-05
o-[Linear solve]    93 iters in 279.63 seconds 0 GFlop/s  ||Ax-b||/||b||=7.53275e-05
o-[Linear solve]    38 iters in 143.59 seconds 0 GFlop/s  ||Ax-b||/||b||=9.31847e-05
o-[Linear solve]    35 iters in 120.24 seconds 0 GFlop/s  ||Ax-b||/||b||=9.78314e-05
o-[Linear solve]    73 iters in 208.3 seconds 0 GFlop/s  ||Ax-b||/||b||=8.12692e-05

Running times with 16 threads (increases again)

o-[Linear solve]    22 iters in 155.64 seconds 0 GFlop/s  ||Ax-b||/||b||=7.8568e-05
o-[Linear solve]    10 iters in 106.97 seconds 0 GFlop/s  ||Ax-b||/||b||=7.25841e-05
o-[Linear solve]    13 iters in 113.38 seconds 0 GFlop/s  ||Ax-b||/||b||=6.33273e-05
o-[Linear solve]    13 iters in 107.89 seconds 0 GFlop/s  ||Ax-b||/||b||=9.99431e-05
o-[Linear solve]    16 iters in 126.62 seconds 0 GFlop/s  ||Ax-b||/||b||=6.81104e-05
o-[Linear solve]    17 iters in 127.25 seconds 0 GFlop/s  ||Ax-b||/||b||=6.06977e-05
o-[Linear solve]    18 iters in 129.72 seconds 0 GFlop/s  ||Ax-b||/||b||=7.01995e-05
o-[Linear solve]    18 iters in 136.27 seconds 0 GFlop/s  ||Ax-b||/||b||=8.95339e-05
o-[Linear solve]    19 iters in 139.25 seconds 0 GFlop/s  ||Ax-b||/||b||=9.93522e-05
o-[Linear solve]    20 iters in 135.35 seconds 0 GFlop/s  ||Ax-b||/||b||=9.19154e-05
o-[Linear solve]    16 iters in 125.27 seconds 0 GFlop/s  ||Ax-b||/||b||=6.86911e-05
o-[Linear solve]    16 iters in 112.47 seconds 0 GFlop/s  ||Ax-b||/||b||=9.49837e-05
o-[Linear solve]    16 iters in 118.59 seconds 0 GFlop/s  ||Ax-b||/||b||=8.53771e-05
o-[Linear solve]    21 iters in 143.79 seconds 0 GFlop/s  ||Ax-b||/||b||=7.50488e-05
o-[Linear solve]    21 iters in 145.26 seconds 0 GFlop/s  ||Ax-b||/||b||=9.23609e-05
o-[Linear solve]    24 iters in 148.75 seconds 0 GFlop/s  ||Ax-b||/||b||=9.86193e-05
o-[Linear solve]    23 iters in 157.27 seconds 0 GFlop/s  ||Ax-b||/||b||=7.68229e-05
o-[Linear solve]    23 iters in 148.08 seconds 0 GFlop/s  ||Ax-b||/||b||=7.55897e-05
o-[Linear solve]    26 iters in 165.84 seconds 0 GFlop/s  ||Ax-b||/||b||=7.50017e-05
o-[Linear solve]    26 iters in 161.99 seconds 0 GFlop/s  ||Ax-b||/||b||=8.27896e-05
o-[Linear solve]    29 iters in 174.06 seconds 0 GFlop/s  ||Ax-b||/||b||=8.07129e-05
o-[Linear solve]    30 iters in 176.88 seconds 0 GFlop/s  ||Ax-b||/||b||=8.9117e-05
o-[Linear solve]    29 iters in 173 seconds 0 GFlop/s  ||Ax-b||/||b||=8.3026e-05
@ddemidov
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Hello, did you try using numactl -l to run your program with OMP_PLACES=cores, OMP_SCHEDULE=static, OMP_WAIT_POLICY=active (see #203)? Also, often it helps to turn hyperthreading off.

@BrunoLevy
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BrunoLevy commented Nov 13, 2024 •
edited
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Thank you very much Denis !

I tested, with these flags and numactl, result is better than with default setting, but not as good as limiting the number of threads to 32 (performance are around what I obtain for 64 threads). But this machine is quite special (not only it has 4 big multicores, but also it has 6 TB of RAM, this may also explain, even if I'm using only around 200 GB)

and it is not a blocking issue anyway, but these options are still interesting to know, thank you for the pointer.

@ddemidov
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how many memory channels do you have? amgcl performance is usually memory-bound.

@BrunoLevy
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Makes sense !
On this machine, there are four CPUs, four memory channels per CPU, each channel manages three DIMM slots
(so 16 memory channels in total).
Performance seems to be best around 32 threads, this makes 2 threads per memory channel, sounds reasonable !

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@ddemidov @BrunoLevy