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config.yml
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config.yml
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site_name: "de.NBI Cloud Wiki"
docs_dir: /srv_root/docs/wiki
site_dir: /var/www/html/wiki
theme:
name: material
palette:
- media: "(prefers-color-scheme: light)"
scheme: default
primary: 'light blue'
accent: 'light blue'
toggle:
icon: material/weather-sunny
name: Switch to dark mode
- media: "(prefers-color-scheme: dark)"
scheme: slate
primary: 'light blue'
accent: 'light blue'
toggle:
icon: material/weather-night
name: Switch to light mode
logo: 'img/denbi.svg'
favicon: 'img/denbi.svg'
features:
- navigation.top
- navigation.indexes
repo_name: 'deNBI/cloud-user-docs'
repo_url: 'https://github.com/deNBI/cloud-user-docs'
edit_uri: blob/master/wiki/
use_directory_urls: true
site_url: !ENV [ SITE_URL, 'https://cloud.denbi.de/wiki/' ]
plugins:
- search
- glightbox
- macros
- git-revision-date-localized:
fallback_to_build_date: true
- htmlproofer:
enabled: !ENV [ ENABLED_HTMLPROOFER,False ]
raise_error_after_finish: True
raise_error_excludes:
-1: [ "https://cloud.denbi.de/portal/webapp/#/userinfo","http://169.254.169.254","https://login.elixir-czech.org/oidc/","https://spreg-legacy.aai.elixir-czech.org/spreg/auth/requests/new","https://spreg-legacy.aai.elixir-czech.org/spreg/auth/facilities/myServices","http://BIBIGRID_MASTER/ganglia" ]
400: [ "http://169.254.169.254" ]
403: [ "https://s3.denbi.uni-tuebingen.de" ]
500: [ "https://cloud.denbi.de/register", "https://signup.aai.lifescience-ri.eu/fed/registrar/?vo=elixir_test" ]
504: [ "https://cloud.denbi.de/about/credits-calculator/", "https://packages.ubuntu.com/","https://denbi-cloud.bihealth.org","http://apt-cache.bi.denbi.de:9999","http://129.70.51.2:9999","https://cloud.denbi.dkfz-heidelberg.de","https://denbi-cloud.bioquant.uni-heidelberg.de","https://denbi-cloud.bioquant.uni-heidelberg.de" ]
markdown_extensions:
- abbr
- attr_list
- admonition
- codehilite
- def_list
- footnotes
- tables
- toc:
permalink: true
- pymdownx.betterem:
smart_enable: all
- pymdownx.emoji:
emoji_index: !!python/name:material.extensions.emoji.twemoji
emoji_generator: !!python/name:materialx.emoji.to_svg
- pymdownx.caret
- pymdownx.critic
- pymdownx.details
- pymdownx.inlinehilite
- pymdownx.keys
- pymdownx.magiclink
- pymdownx.mark
- pymdownx.smartsymbols
- pymdownx.snippets:
check_paths: True
auto_append:
- /srv_root/docs/wiki/includes/glossary.md
- pymdownx.superfences
- pymdownx.tasklist:
custom_checkbox: true
- pymdownx.tilde
- pymdownx.arithmatex:
generic: true
extra_javascript:
- !ENV [ MATOMO_SCRIPT_FILE, matomo.js]
- mathjax.js
- https://cdnjs.cloudflare.com/polyfill/v3/polyfill.min.js?version=3.111.0&features=es6
- https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-mml-chtml.js
extra:
social:
- icon: fontawesome/brands/twitter
link: https://twitter.com/denbiOffice
name: de.NBI on Twitter
- icon: fontawesome/brands/twitter
link: https://twitter.com/denbiCloud
name: de.NBI Cloud on Twitter
- icon: fontawesome/brands/linkedin
link: https://www.linkedin.com/company/de-nbi/
name: de.NBI on LinkedIN
- icon: fontawesome/brands/github
link: https://github.com/deNBI/
name: de.NBI on GitHub
- icon: fontawesome/brands/youtube
link: https://www.youtube.com/channel/UCgZ5PU3CyD4c8yxxzJi130g?view_as=subscriber
name: de.NBI on YouTube
- icon: fontawesome/brands/wikipedia-w
link: https://en.wikipedia.org/wiki/German_Network_for_Bioinformatics_Infrastructure
name: de.NBI on Wikipedia
simplevm_wiki_link: !ENV [ SIMPLE_VM_WIKI_LINK, 'https://simplevm.denbi.de/wiki/' ]
nav:
- 'Home': index.md
- 'Registration': registration.md
- 'Citation and publication': citation_and_publication.md
- 'Portal':
- 'Allocation': portal/allocation.md
- 'Resource/Lifetime Modifications': portal/modification.md
- 'Project Termination': portal/termination.md
- 'Project Overview': portal/project_overview.md
- 'Profile Page': portal/user_information.md
- 'Using Vault': portal/vault_user.md
- 'Cloud Credits': portal/credits.md
- 'Personal Data': portal/personal_data.md
- 'Simple VM':
- simple_vm/index.md
- 'OpenStack Quickstart': quickstart.md
- 'Security': security.md
- 'Concept':
- 'OpenStack Basics': Concept/basics.md
- 'OpenStack Components': Concept/openstack.md
- 'Flavors': Concept/flavors.md
- 'Images': Concept/images.md
- 'Tutorials':
- 'Tutorials': Tutorials/index.md
- 'Access de.NBI Virtual Machines from Windows 10': Tutorials/Win10_SSH/index.md
- 'Access project infrastructure with sshuttle': Tutorials/Sshuttle/index.md
- 'Ansible Automation': Tutorials/Ansible/index.md
- 'Bibigrid': Tutorials/BiBiGrid/index.md
- 'Blast on BiBiGrid': Tutorials/BlastOnBiBiGrid/index.md
- 'Hybridcloud': Tutorials/Hybridcloud/index.md
- 'Install latest CUDA version': Tutorials/CUDA/index.md
- 'JupyterHub': Tutorials/JupyterHub/index.md
- 'Kubermatic': Tutorials/Kubermatic/index.md
- 'Loadbalancer': Tutorials/Loadbalancer/index.md
- 'Object Storage': Tutorials/ObjectStorage/index.md
- 'Public Web Server': Tutorials/PublicWebServer/index.md
- 'Reverse Proxy with Elixir AAI': Tutorials/Elixir_AAI/Elixir_AAI.md
- 'Save FloatingIPs': Tutorials/SaveFloatingIPs/index.md
- 'Set up RStudio': Tutorials/RStudio_Server/index.md
- 'Persistent SSH Sessions': Tutorials/Persistent_SSH_Sessions/index.md
- 'Theia Web IDE': Tutorials/TheiaIde/index.md
- 'UserData': Tutorials/UserData/index.md
- 'Using X2GO': Tutorials/X2GO/x2go.md
- 'FAQ': 'FAQ.md'
- 'Compute Center Specific':
- 'Berlin': Compute_Center/Berlin.md
- 'Bielefeld': Compute_Center/Bielefeld.md
- 'EMBL': Compute_Center/EMBL.md
- 'Freiburg': Compute_Center/Freiburg.md
- 'Giessen': Compute_Center/Giessen.md
- 'Heidelberg Uni': Compute_Center/Heidelberg.md
- 'Heidelberg DKFZ': Compute_Center/Heidelberg-DKFZ.md
- 'Tuebingen': Compute_Center/Tuebingen.md
- 'Cloud Admin':
- 'Project management': cloud_admin/project_management.md
- 'Configure OpenStack to use Elixir AAI via OpenID Connect': cloud_admin/elixir_OIDC.md
- 'Register your identity provider for ELIXIR': cloud_admin/identity_provider.md
- 'News management': cloud_admin/news_management.md
- 'Vault management': cloud_admin/vault_admin.md