Update to 0.8.2 of cooler and set version number to 2.2.1

deeptools · Feb 8, 2019 · 732e813 · 732e813
1 parent 2e2ff1e
commit 732e813
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Showing 4 changed files with 6 additions and 5 deletions.
diff --git a/hicexplorer/_version.py b/hicexplorer/_version.py
@@ -2,4 +2,4 @@
 # This file is originally generated from Git information by running 'setup.py
 # version'. Distribution tarballs contain a pre-generated copy of this file.
 
-__version__ = '2.2'
+__version__ = '2.2.1'
diff --git a/hicexplorer/utilities.py b/hicexplorer/utilities.py
@@ -490,6 +490,6 @@ def remove_non_ascii(pText):
 
 
 def check_cooler(pFileName):
-    if pFileName.endswith('.cool') or cooler.io.is_cooler(pFileName) or'.mcool' in pFileName:
+    if pFileName.endswith('.cool') or cooler.fileops.is_cooler(pFileName) or'.mcool' in pFileName:
         return True
     return False
diff --git a/requirements.txt b/requirements.txt
@@ -13,5 +13,6 @@ future >= 0.17.*
 unidecode >= 1.0.*
 hic2cool >= 0.4.*
 psutil >= 5.4.8
-hicmatrix = 5
+hicmatrix >= 7
+cooler >= 0.8.2
 pygenometracks >= 2.1
diff --git a/setup.py b/setup.py
@@ -104,10 +104,10 @@ def checkProgramIsInstalled(self, program, args, where_to_download,
                        "pyBigWig >= 0.3.*",
                        "six >= 1.11.*",
                        "future >= 0.17.*",
-                       "cooler >= 0.7.11*",
+                       "cooler >= 0.8.2*",
                        "jinja2 >= 2.10.*",
                        "unidecode >= 1.0.*",
-                       "hicmatrix == 5",
+                       "hicmatrix >= 7",
                        "pygenometracks >= 2.1",
                        "psutil >= 5.4.8",
                        "hic2cool >= 0.4"