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suitable for metagenomic assemblies? #6

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guille0387 opened this issue May 7, 2019 · 1 comment

guille0387 commented May 7, 2019

Dear deprekate

Thank you so much for developing this, I'm sure it'll come extremely useful for anyone interested in phages :)

Just wanted to ask you if PHANOTATE is suitable for gene calling in phage contigs retrieved from metagenomic assemblies?

Thanks!

Owner

deprekate commented May 8, 2019

It should be suitable, and one of the better options. Most current gene callers are made to run on bacteria; so much longer sequences (> 20,000bp).

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