gff_sqlite_tool_macros.xml

<macros>
    
    <xml name="requirements">
        <requirements>
            <requirement type="python-module">gffutils</requirement>
            <requirement type="python-module">Bio</requirement>
            <requirement type="python-module">BCBio</requirement>
            <requirement type="python-module">gag</requirement>
            <requirement type="python-module">sqlite3</requirement>
            <requirement type="package">tbl2asn</requirement>
        </requirements>
    </xml>
    
    <xml name="stdio">
        <stdio>
            <exit_code level="fatal" range="1:"/>
        </stdio>    
    </xml>
    
    <token name="@VERSION@">0.0.1</token>
    
    <token name="@CITATION@">
<![CDATA[
------

**Citation**

If you use the gff sqlite tool in your research, please cite the following:
]]>
    </token>
    
    <xml name="citations">
        <citations>
            <citation type="bibtex">
                @ARTICLE{bgruening_galaxytools,
                    Author = {Björn Grüning, Cameron Smith, Torsten Houwaart, Nicola Soranzo, Eric Rasche},
                    keywords = {bioinformatics, ngs, galaxy, cheminformatics, rna},
                    title = {{Galaxy Tools - A collection of bioinformatics and cheminformatics tools for the Galaxy environment}},
                    url = {https://github.com/bgruening/galaxytools}
                }
            </citation>
            <yield />
        </citations>
    </xml>
    
    <xml name="sanitize_query">
        <sanitizer invalid_char="">
            <valid initial="string.printable"/>
       </sanitizer>
    </xml>
    
</macros>