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GMSH

Files

  • simnibs/external/bin/win/gmsh.exe
  • simnibs/external/bin/linux/gmsh
  • simnibs/external/bin/osx/gmsh
  • simnibs/resources/logos/gmsh

License

             Gmsh is copyright (C) 1997-2019

                   Christophe Geuzaine
                 <cgeuzaine at uliege.be>

                           and

                  Jean-Francois Remacle
          <jean-francois.remacle at uclouvain.be>

Gmsh is provided under the terms of the GNU General Public License (GPL), Version 2 or later, with the following exception:

The copyright holders of Gmsh give you permission to combine Gmsh with code included in the standard release of TetGen (from Hang Si), Netgen (from Joachim Sch"oberl), METIS (from George Karypis at the University of Minnesota), OpenCASCADE (from Open CASCADE S.A.S) and ParaView (from Kitware, Inc.) under their respective licenses. You may copy and distribute such a system following the terms of the GNU GPL for Gmsh and the licenses of the other code concerned, provided that you include the source code of that other code when and as the GNU GPL requires distribution of source code.

Note that people who make modified versions of Gmsh are not obligated to grant this special exception for their modified versions; it is their choice whether to do so. The GNU General Public License gives permission to release a modified version without this exception; this exception also makes it possible to release a modified version which carries forward this exception.

MESHFIX

Files

  • simnibs/bin/win/meshfix.exe
  • simnibs/bin/linux/meshfix
  • simnibs/bin/osx/meshfix

Copyright

Marco Attene, Mirko Windhoff, Axel Thielscher

License

GNU GPL V2 or later

SPM12

Files

  • simibs/resources/spm12 (except toolbox/cat12)

Copyright

Copyright (C) 1991,1994-2018 Wellcome Centre for Human Neuroimaging

License

GNU GPL V2 or later

CAT12

Files

  • simibs/resources/spm12/toolbox/cat12

Copyright

Christian Gaser and Robert Dahnke (Jena University Hospital, Departments of Psychiatry and Neurology)

License

GNU GPL V2 or later

PETSC

Files

  • simnibs/lib/win/libpetsc*
  • simnibs/include/win/petsc
  • simnibs/lib/linux/libpetsc*
  • simnibs/include/linux/petsc (some files)
  • simnibs/lib/osx/libpetsc*
  • simnibs/include/osx/petsc (some files)

Copyright

Copyright (c) 1991-2014, UChicago Argonne, LLC and the PETSc Development Team All rights reserved.

License

Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met:

  • Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer.
  • Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution.

THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

HYPRE

Files

  • simnibs/lib/win/libpetsc*
  • simnibs/include/win/hypre
  • simnibs/lib/linux/libpetsc*
  • simnibs/include/linux/petsc (some files)
  • simnibs/lib/osx/libpetsc*
  • simnibs/include/osx/petsc (some files)

Copyright

Copyright (c) 2008, Lawrence Livermore National Security, LLC. Produced at the Lawrence Livermore National Laboratory under Contract No. DE-AC52-07NA27344 with the DOE.

License

GNU LGPL V2

MPICH

Files

  • simnibs/lib/linux/libmpi.*
  • simnibs/lib/osx/libmpi.*
  • simnibs/include/linux/petsc (some files)
  • simnibs/include/osx/petsc (some files)

Copyright

The following is a notice of limited availability of the code, and disclaimer which must be included in the prologue of the code and in all source listings of the code.

Copyright Notice

  • 2002 University of Chicago

Permission is hereby granted to use, reproduce, prepare derivative works, and to redistribute to others. This software was authored by:

Mathematics and Computer Science Division Argonne National Laboratory, Argonne IL 60439

(and)

Department of Computer Science University of Illinois at Urbana-Champaign

License

		      GOVERNMENT LICENSE

Portions of this material resulted from work developed under a U.S. Government Contract and are subject to the following license: the Government is granted for itself and others acting on its behalf a paid-up, nonexclusive, irrevocable worldwide license in this computer software to reproduce, prepare derivative works, and perform publicly and display publicly.

			  DISCLAIMER

This computer code material was prepared, in part, as an account of work sponsored by an agency of the United States Government. Neither the United States, nor the University of Chicago, nor any of their employees, makes any warranty express or implied, or assumes any legal liability or responsibility for the accuracy, completeness, or usefulness of any information, apparatus, product, or process disclosed, or represents that its use would not infringe privately owned rights.

MSMPI

Files

  • simnibs/lib/win/msmpi.*
  • simnibs/include/win/mpi

License

MIT License

Copyright (c) Microsoft Corporation. All rights reserved.

Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:

The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.

THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE

CYGWIN

Files

  • simnibs/bin/win/cygwin1.dll

License

GNU LGPLv3

BLAS

Files

  • simnibs/bin/win/cygblas-0.dll

License

The reference BLAS is a freely-available software package. It is available from netlib via anonymous ftp and the World Wide Web. Thus, it can be included in commercial software packages (and has been). We only ask that proper credit be given to the authors.

Like all software, it is copyrighted. It is not trademarked, but we do ask the following:

If you modify the source for these routines we ask that you change the name of the routine and comment the changes made to the original.

We will gladly answer any questions regarding the software. If a modification is done, however, it is the responsibility of the person who modified the routine to provide support.

Read more about this license at http://www.netlib.org/blas/faq.html#2

SCIKIT-IMAGE

Files

  • simnibs/msh/_marching_cubes_lewiner_luts.py
  • simnibs/cython_code/_marching_cubes_lewiner_cy.pyx
  • last lines in simnibs/msh/hmutils.py

License

Copyright (C) 2011, the scikit-image team All rights reserved.

Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met:

Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. Neither the name of skimage nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission.

THIS SOFTWARE IS PROVIDED BY THE AUTHOR AS IS AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

PYGPC

Files

  • simnibs/pygpc (except adaptive.py)

Copyright

Konstantin Weise (https://github.com/konstantinweise/pygpc)

License

GPL V3

PyPardiso

Files

  • simnibs/simulation/pardiso.py (Modified by G. Saturnino)

Copyright

Adrian Haas, ETH Zurich (https://github.com/haasad/PyPardisoProject)

License

BSD 3-Clause

MPRF

Files

  • simnibs/include/**/mprf
  • simnibs/lib/**/mprf

Copyright

https://www.mpfr.org/

Licence

GNU LGPL 3

GMP

Files

  • simnibs/include/**/gmp
  • simnibs/lib/**/gmp

Copyright

https://www.gmplib.org/

Licence

GNU LGPL 3

ZLIB

Files

  • simnibs/lib/linux/libz.so
  • simnibs/lib/linux/libz.dylib
  • simnibs/lib/win/zlib.*

Copyright

Copyright (C) 1995-2017 Jean-loup Gailly and Mark Adler

License

zlib.h -- interface of the 'zlib' general purpose compression library version 1.2.11, January 15th, 2017

Copyright (C) 1995-2017 Jean-loup Gailly and Mark Adler

This software is provided 'as-is', without any express or implied warranty. In no event will the authors be held liable for any damages arising from the use of this software.

Permission is granted to anyone to use this software for any purpose, including commercial applications, and to alter it and redistribute it freely, subject to the following restrictions:

  1. The origin of this software must not be misrepresented; you must not claim that you wrote the original software. If you use this software in a product, an acknowledgment in the product documentation would be appreciated but is not required.
  2. Altered source versions must be plainly marked as such, and must not be misrepresented as being the original software.
  3. This notice may not be removed or altered from any source distribution.

Jean-loup Gailly Mark Adler [email protected] [email protected]

ADMlib

Files

  • simnibs/optimization/ADMlib.py

License

The copyrights of this software are owned by Duke University. As such, two licenses to this software are offered:

  • An open source license under the GNU General Public License (GPL-v2.0), for non-commercial and academic purposes only (https://opensource.org/licenses/gpl-2.0.php).
  • A commercial license with Duke University, for commercial use without the GPL-v2.0 restrictions.

As a recipient of this software, you may choose which license to receive the code under. Outside contributions to the Duke owned code base cannot be accepted unless the contributor transfers the copyright to those changes over to Duke University.

To enter a commercial license agreement, please contact the Digital Innovations department at Duke Office of Licensing and Ventures (https://olv.duke.edu/software/) at [email protected] with reference to “OLV File No. 7148” in your email.

Please note that this software is distributed AS IS, WITHOUT ANY WARRANTY; and without the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.