pom.xml

<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
	xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
	<modelVersion>4.0.0</modelVersion>
	<groupId>ndexbio.org</groupId>
	<artifactId>ndex-example</artifactId>
	<version>0.0.1-SNAPSHOT</version>
	<name>NDEx Example Application</name>
	<description>Example command line application demonstrating use of ndex-java-client</description>
	<repositories>
		<repository>
			<id>biopax.releases</id>
			<name>BioPAX Repository at Sourceforge</name>
			<url>http://biopax.sourceforge.net/m2repo/releases/</url>
			<snapshots>
				<enabled>false</enabled>
			</snapshots>
		</repository>
	</repositories>
	<dependencies>
		<!-- 3rd party libraries -->
		<dependency>
			<groupId>com.fasterxml.jackson.core</groupId>
			<artifactId>jackson-core</artifactId>
			<version>2.2.2</version>
		</dependency>
		<dependency>
			<groupId>com.fasterxml.jackson.core</groupId>
			<artifactId>jackson-databind</artifactId>
			<version>2.2.2</version>
		</dependency>

		<dependency>
			<groupId>commons-codec</groupId>
			<artifactId>commons-codec</artifactId>
			<version>20041127.091804</version>
		</dependency>
		<dependency>
			<groupId>junit</groupId>
			<artifactId>junit-dep</artifactId>
			<version>4.10</version>
		</dependency>
		<dependency>
			<groupId>org.biopax.paxtools</groupId>
			<artifactId>paxtools-core</artifactId>
			<version>4.2.1</version>
		</dependency>
		<dependency>
			<groupId>org.ndexbio.client</groupId>
			<artifactId>ndex-java-client</artifactId>
			<version>0.0.1-SNAPSHOT</version>
		</dependency>
				<dependency>
			<groupId>org.ndexbio</groupId>
			<artifactId>ndex-task</artifactId>
			<version>0.0.1-SNAPSHOT</version>
		</dependency>
		<dependency>
			<groupId>org.ndexbio</groupId>
			<artifactId>ndex-common</artifactId>
			<version>0.0.1-SNAPSHOT</version>
		</dependency>
	</dependencies>
	<build>
		<plugins>
			<plugin>
				<groupId>org.apache.maven.plugins</groupId>
				<artifactId>maven-compiler-plugin</artifactId>
				<version>3.1</version>
				<configuration>
					<source>1.7</source>
					<target>1.7</target>
				</configuration>
			</plugin>

			<plugin>
				<artifactId>maven-assembly-plugin</artifactId>
				<configuration>
					<descriptorRefs>
						<descriptorRef>jar-with-dependencies</descriptorRef>
					</descriptorRefs>
					<archive>
						<manifest>
							<mainClass>top.CommandProcessor</mainClass>
						</manifest>
					</archive>
				</configuration>
				<executions>
					<execution>
						<phase>package</phase>
						<goals>
							<goal>single</goal>
						</goals>
					</execution>
				</executions>
			</plugin>
		</plugins>
	</build>
</project>