From fc5e0fdab3c168894e844a886e4f8c863d67ea20 Mon Sep 17 00:00:00 2001 From: David Kahle Date: Tue, 29 Jan 2019 17:41:32 -0600 Subject: [PATCH] initial commit of revdepcheck::revdep_check() and revdepcheck::revdep_report() --- .gitignore | 1 + revdep/.gitignore | 6 + revdep/README.md | 90 ++++++++ revdep/check.R | 6 +- revdep/checks.rds | Bin 3497 -> 6249 bytes revdep/email.yml | 4 + revdep/problems.md | 554 +++++++++++++++++++++++++++++++++++++++++++++ 7 files changed, 658 insertions(+), 3 deletions(-) create mode 100644 revdep/README.md create mode 100644 revdep/email.yml create mode 100644 revdep/problems.md diff --git a/.gitignore b/.gitignore index ddf3801..c498a6a 100644 --- a/.gitignore +++ b/.gitignore @@ -2,3 +2,4 @@ .Rhistory .RData README_cache/ +/revdep/.cache.rds diff --git a/revdep/.gitignore b/revdep/.gitignore index 530234e..7157995 100644 --- a/revdep/.gitignore +++ b/revdep/.gitignore @@ -1 +1,7 @@ +checks +library +checks.noindex +library.noindex +data.sqlite +*.html **/ diff --git a/revdep/README.md b/revdep/README.md new file mode 100644 index 0000000..2d1cee3 --- /dev/null +++ b/revdep/README.md @@ -0,0 +1,90 @@ +# Platform + +|field |value | +|:--------|:----------------------------| +|version |R version 3.5.2 (2018-12-20) | +|os |macOS Mojave 10.14.2 | +|system |x86_64, darwin15.6.0 | +|ui |RStudio | +|language |(EN) | +|collate |en_US.UTF-8 | +|ctype |en_US.UTF-8 | +|tz |America/Chicago | +|date |2019-01-29 | + +# Dependencies + +|package |old |new |Δ | +|:-------|:-----|:---|:--| +|ggmap |2.6.2 |NA |* | + +# Revdeps + +## Couldn't check (4) + +|package |version |error |warning |note | +|:----------------------------------------------------|:-------|:-----|:-------|:----| +|[BPEC](problems.md#bpec) |1.3.0 |1 | | | +|[DataVisualizations](problems.md#datavisualizations) |1.1.4 |1 | | | +|[momentuHMM](problems.md#momentuhmm) |1.4.3 |1 | | | +|[moveHMM](problems.md#movehmm) |1.6 |1 | | | + +## Broken (1) + +|package |version |error |warning |note | +|:------------------------|:-------|:------|:-------|:----| +|[ubeR](problems.md#uber) |0.1.4 |__+1__ | | | + +## All (48) + +|package |version |error |warning |note | +|:----------------------------------------------------|:-------|:------|:-------|:----| +|[aire.zmvm](problems.md#airezmvm) |0.8.0 |1 | |1 | +|[anipaths](problems.md#anipaths) |0.9.6 | | |1 | +|[bioRad](problems.md#biorad) |0.4.0 | | |1 | +|[BPEC](problems.md#bpec) |1.3.0 |1 | | | +|choroplethr |3.6.3 | | | | +|clifro |3.2-1 | | | | +|[countyweather](problems.md#countyweather) |0.1.0 | | |1 | +|[DataVisualizations](problems.md#datavisualizations) |1.1.4 |1 | | | +|earthtones |0.1.1 | | | | +|echor |0.1.1 | | | | +|[epiflows](problems.md#epiflows) |0.2.0 | | |1 | +|[FLightR](problems.md#flightr) |0.4.7 | | |1 | +|GADMTools |3.0-1 | | | | +|geoknife |1.6.1 | | | | +|geomnet |0.2.0 | | | | +|ggfocus |0.9 | | | | +|ggquiver |0.1.0 | | | | +|ggsn |0.4.0 | | | | +|ggsolvencyii |0.1.2 | | | | +|[ggvoronoi](problems.md#ggvoronoi) |0.8.2 |1 | | | +|[helminthR](problems.md#helminthr) |1.0.6 | | |1 | +|[hurricaneexposure](problems.md#hurricaneexposure) |0.0.1 | | |1 | +|[inlabru](problems.md#inlabru) |2.1.9 | | |2 | +|macleish |0.3.2 | | | | +|[mapr](problems.md#mapr) |0.4.0 | | |1 | +|[momentuHMM](problems.md#momentuhmm) |1.4.3 |1 | | | +|move |3.1.0 | | | | +|[moveHMM](problems.md#movehmm) |1.6 |1 | | | +|psyosphere |0.1.4 | | | | +|PWFSLSmoke |1.1.3 | | | | +|RAM |1.2.1.7 | | | | +|rnoaa |0.8.4 | | | | +|rnrfa |1.5.0 | | | | +|ropenaq |0.2.6 | | | | +|[rsinaica](problems.md#rsinaica) |0.6.0 | | |1 | +|SDLfilter |1.1.1 | | | | +|SensusR |2.3.0 | | | | +|sidier |4.0.3 | | | | +|[spew](problems.md#spew) |1.3.0 | |1 |2 | +|SWMPr |2.3.0 | | | | +|[totalcensus](problems.md#totalcensus) |0.5.1 | | |2 | +|[trackeR](problems.md#tracker) |1.2.0 | | |1 | +|tweet2r |1.1 | | | | +|[ubeR](problems.md#uber) |0.1.4 |__+1__ | | | +|[vmsbase](problems.md#vmsbase) |2.2.0 |1 | | | +|[wdpar](problems.md#wdpar) |0.0.1 | | |1 | +|[weathercan](problems.md#weathercan) |0.2.8 | | |2 | +|weatherr |0.1.2 | | | | + diff --git a/revdep/check.R b/revdep/check.R index cfa9e6e..e262948 100644 --- a/revdep/check.R +++ b/revdep/check.R @@ -1,5 +1,5 @@ library("devtools") -res <- revdep_check() -revdep_check_save_summary(res) -revdep_check_save_logs(res) +revdep_check() +revdep_check_save_summary() +revdep_check_print_problems() diff --git a/revdep/checks.rds b/revdep/checks.rds index f1ddcbc28ce149f6fd9fde4d9eaa785271225d80..bc8510c5812dad706a84ee7c63ab6dd19c53cc1a 100644 GIT binary patch literal 6249 zcmV-v7?$TBiwFP!000001MOW+Y#T{-*7$d<*~!mtfFRikwpN~5lU}j;C&@CQH7HB+ z&sefFq-@QsGog#!#b%k^U368qC<-~uDYpOtk^tG*sR1UUy-U`_!NAlJ=t4mstP zYp|17)zwY1*_3VCTG`lJ)`d8jtG6qy0O%)kM&5ue*d( z6X!SD@Y`mI;CcAmo4Gua`t$_{7z3=K`vq-gmHP z2iPW2GLtzD_M_Kx{&7?pOHvaBn+_Ht@tq%bA$^N+w?VxY8|sjYI^u;WwQak&8^JSxG6pWjNLLmw+8cRkw 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zM2&u;Wi>nwV+!3PVMto&j$qo_ws2DiR%6FM=4}uqpo4VaR| zhaD25H9@?W|3NF@w-b-A#!uK0$CWdxL#e7}ZQSIUxK26rn{aWy^_vvG@_-8(KIiE6 z+*;_u0tv0iIMTgY-4CR`JF9Qx57o8J&yMC{SMO6az3k3sofZXqFS_#@7=BAn&jt<& zQG@nfm+Z}Sn@Ji;7UJecCpMD|P#9U^DXU$D+m>;1zIW)l?XMZQ1ALrc;Qpzu03<)K z2mlMA0~S@vl{dV>-l0T;ZiowZCbuX@e}g?`WND#Lxc&jgWc>aZmsNgHE(U diff --git a/revdep/email.yml b/revdep/email.yml new file mode 100644 index 0000000..18c2a59 --- /dev/null +++ b/revdep/email.yml @@ -0,0 +1,4 @@ +release_date: ??? +rel_release_date: ??? +my_news_url: ??? +release_version: ??? diff --git a/revdep/problems.md b/revdep/problems.md new file mode 100644 index 0000000..4386064 --- /dev/null +++ b/revdep/problems.md @@ -0,0 +1,554 @@ +# aire.zmvm + +Version: 0.8.0 + +## In both + +* checking examples ... ERROR + ``` + Running examples in ‘aire.zmvm-Ex.R’ failed + The error most likely occurred in: + + > ### Name: get_latest_imeca + > ### Title: Get the latest pollution values for each station + > ### Aliases: get_latest_imeca + > + > ### ** Examples + > + > df <- get_latest_imeca() + Error in curl::curl_fetch_memory(url, handle = handle) : + Failed to connect to www.aire.cdmx.gob.mx port 80: Network is unreachable + Calls: get_latest_imeca ... request_fetch -> request_fetch.write_memory -> + Execution halted + ``` + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 52 marked UTF-8 strings + ``` + +# anipaths + +Version: 0.9.6 + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespaces in Imports field not imported from: + ‘knitr’ ‘rgdal’ + All declared Imports should be used. + ``` + +# bioRad + +Version: 0.4.0 + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 6.2Mb + sub-directories of 1Mb or more: + data 1.6Mb + extdata 2.6Mb + ``` + +# BPEC + +Version: 1.3.0 + +## In both + +* checking whether package ‘BPEC’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/david_kahle/Dropbox/dev/ggmap/ggmap/revdep/checks.noindex/BPEC/new/BPEC.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘BPEC’ ... +** package ‘BPEC’ successfully unpacked and MD5 sums checked +** libs +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c bpecfunction.c -o bpecfunction.o +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c hashingfunctions.c -o hashingfunctions.o +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c loopfunctions.c -o loopfunctions.o +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c matrices.c -o matrices.o +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c randomnumbers.c -o randomnumbers.o +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c registerDynamicSymbol.c -o registerDynamicSymbol.o +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c treelikelifunctions.c -o treelikelifunctions.o +clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o BPEC.so bpecfunction.o hashingfunctions.o loopfunctions.o matrices.o randomnumbers.o registerDynamicSymbol.o treelikelifunctions.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation +installing to /Users/david_kahle/Dropbox/dev/ggmap/ggmap/revdep/checks.noindex/BPEC/new/BPEC.Rcheck/BPEC/libs +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error : .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/david_kahle/Dropbox/dev/ggmap/ggmap/revdep/library.noindex/BPEC/rJava/libs/rJava.so': + dlopen(/Users/david_kahle/Dropbox/dev/ggmap/ggmap/revdep/library.noindex/BPEC/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/david_kahle/Dropbox/dev/ggmap/ggmap/revdep/library.noindex/BPEC/rJava/libs/rJava.so + Reason: image not found +ERROR: lazy loading failed for package ‘BPEC’ +* removing ‘/Users/david_kahle/Dropbox/dev/ggmap/ggmap/revdep/checks.noindex/BPEC/new/BPEC.Rcheck/BPEC’ + +``` +### CRAN + +``` +* installing *source* package ‘BPEC’ ... +** package ‘BPEC’ successfully unpacked and MD5 sums checked +** libs +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c bpecfunction.c -o bpecfunction.o +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c hashingfunctions.c -o hashingfunctions.o +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c loopfunctions.c -o loopfunctions.o +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c matrices.c -o matrices.o +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c randomnumbers.c -o randomnumbers.o +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c registerDynamicSymbol.c -o registerDynamicSymbol.o +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c treelikelifunctions.c -o treelikelifunctions.o +clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o BPEC.so bpecfunction.o hashingfunctions.o loopfunctions.o matrices.o randomnumbers.o registerDynamicSymbol.o treelikelifunctions.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation +installing to /Users/david_kahle/Dropbox/dev/ggmap/ggmap/revdep/checks.noindex/BPEC/old/BPEC.Rcheck/BPEC/libs +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error : .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/david_kahle/Dropbox/dev/ggmap/ggmap/revdep/library.noindex/BPEC/rJava/libs/rJava.so': + dlopen(/Users/david_kahle/Dropbox/dev/ggmap/ggmap/revdep/library.noindex/BPEC/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/david_kahle/Dropbox/dev/ggmap/ggmap/revdep/library.noindex/BPEC/rJava/libs/rJava.so + Reason: image not found +ERROR: lazy loading failed for package ‘BPEC’ +* removing ‘/Users/david_kahle/Dropbox/dev/ggmap/ggmap/revdep/checks.noindex/BPEC/old/BPEC.Rcheck/BPEC’ + +``` +# countyweather + +Version: 0.1.0 + +## In both + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 1 marked UTF-8 string + ``` + +# DataVisualizations + +Version: 1.1.4 + +## In both + +* checking whether package ‘DataVisualizations’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/david_kahle/Dropbox/dev/ggmap/ggmap/revdep/checks.noindex/DataVisualizations/new/DataVisualizations.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘DataVisualizations’ ... +** package ‘DataVisualizations’ successfully unpacked and MD5 sums checked +** libs +clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/david_kahle/Dropbox/dev/ggmap/ggmap/revdep/library.noindex/DataVisualizations/Rcpp/include" -I"/Users/david_kahle/Dropbox/dev/ggmap/ggmap/revdep/library.noindex/DataVisualizations/RcppArmadillo/include" -I/usr/local/include -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o +clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/david_kahle/Dropbox/dev/ggmap/ggmap/revdep/library.noindex/DataVisualizations/Rcpp/include" -I"/Users/david_kahle/Dropbox/dev/ggmap/ggmap/revdep/library.noindex/DataVisualizations/RcppArmadillo/include" -I/usr/local/include -fPIC -Wall -g -O2 -c c_inPSphere2D.cpp -o c_inPSphere2D.o +clang++ -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o DataVisualizations.so RcppExports.o c_inPSphere2D.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation +ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0' +ld: warning: directory not found for option '-L/usr/local/gfortran/lib' +ld: library not found for -lgfortran +clang: error: linker command failed with exit code 1 (use -v to see invocation) +make: *** [DataVisualizations.so] Error 1 +ERROR: compilation failed for package ‘DataVisualizations’ +* removing ‘/Users/david_kahle/Dropbox/dev/ggmap/ggmap/revdep/checks.noindex/DataVisualizations/new/DataVisualizations.Rcheck/DataVisualizations’ + +``` +### CRAN + +``` +* installing *source* package ‘DataVisualizations’ ... +** package ‘DataVisualizations’ successfully unpacked and MD5 sums checked +** libs +clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/david_kahle/Dropbox/dev/ggmap/ggmap/revdep/library.noindex/DataVisualizations/Rcpp/include" -I"/Users/david_kahle/Dropbox/dev/ggmap/ggmap/revdep/library.noindex/DataVisualizations/RcppArmadillo/include" -I/usr/local/include -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o +clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/david_kahle/Dropbox/dev/ggmap/ggmap/revdep/library.noindex/DataVisualizations/Rcpp/include" -I"/Users/david_kahle/Dropbox/dev/ggmap/ggmap/revdep/library.noindex/DataVisualizations/RcppArmadillo/include" -I/usr/local/include -fPIC -Wall -g -O2 -c c_inPSphere2D.cpp -o c_inPSphere2D.o +clang++ -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o DataVisualizations.so RcppExports.o c_inPSphere2D.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation +ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0' +ld: warning: directory not found for option '-L/usr/local/gfortran/lib' +ld: library not found for -lgfortran +clang: error: linker command failed with exit code 1 (use -v to see invocation) +make: *** [DataVisualizations.so] Error 1 +ERROR: compilation failed for package ‘DataVisualizations’ +* removing ‘/Users/david_kahle/Dropbox/dev/ggmap/ggmap/revdep/checks.noindex/DataVisualizations/old/DataVisualizations.Rcheck/DataVisualizations’ + +``` +# epiflows + +Version: 0.2.0 + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespace in Imports field not imported from: ‘htmlwidgets’ + All declared Imports should be used. + ``` + +# FLightR + +Version: 0.4.7 + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespace in Imports field not imported from: ‘rgdal’ + All declared Imports should be used. + Missing or unexported object: ‘ggmap::has_goog_key’ + ``` + +# ggvoronoi + +Version: 0.8.2 + +## In both + +* checking tests ... + ``` + ERROR + Running the tests in ‘tests/testthat.R’ failed. + Last 13 lines of output: + 5: tryCatch(loadNamespace(name), error = function(e) stop(e)) + 6: tryCatchList(expr, classes, parentenv, handlers) + 7: tryCatchOne(expr, names, parentenv, handlers[[1L]]) + 8: value[[3L]](cond) + + ══ testthat results ════════════════════════════════════════════════════════════ + OK: 12 SKIPPED: 0 FAILED: 5 + 1. Error: Voronoi diagram heatmaps work correctly with continuous fill (@test_aes_continuous.R#36) + 2. Error: Voronoi diagram heatmaps work correctly with discrete fill (@test_aes_discrete.R#36) + 3. Error: Voronoi diagram outlines work correctly with blank diagram (@test_outline.R#33) + 4. Error: Voronoi diagram outlines work correctly with continuous fill (@test_outline.R#37) + 5. Error: Voronoi diagram outlines work correctly with discrete fill (@test_outline.R#41) + + Error: testthat unit tests failed + Execution halted + ``` + +# helminthR + +Version: 1.0.6 + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespaces in Imports field not imported from: + ‘knitr’ ‘rmarkdown’ + All declared Imports should be used. + ``` + +# hurricaneexposure + +Version: 0.0.1 + +## In both + +* checking package dependencies ... NOTE + ``` + Package suggested but not available for checking: ‘hurricaneexposuredata’ + ``` + +# inlabru + +Version: 2.1.9 + +## In both + +* checking package dependencies ... NOTE + ``` + Package suggested but not available for checking: ‘INLA’ + ``` + +* checking Rd cross-references ... NOTE + ``` + Package unavailable to check Rd xrefs: ‘INLA’ + ``` + +# mapr + +Version: 0.4.0 + +## In both + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 164 marked UTF-8 strings + ``` + +# momentuHMM + +Version: 1.4.3 + +## In both + +* checking whether package ‘momentuHMM’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/david_kahle/Dropbox/dev/ggmap/ggmap/revdep/checks.noindex/momentuHMM/new/momentuHMM.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘momentuHMM’ ... +** package ‘momentuHMM’ successfully unpacked and MD5 sums checked +** libs +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/david_kahle/Dropbox/dev/ggmap/ggmap/revdep/library.noindex/momentuHMM/Rcpp/include" -I"/Users/david_kahle/Dropbox/dev/ggmap/ggmap/revdep/library.noindex/momentuHMM/RcppArmadillo/include" -I/usr/local/include -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/david_kahle/Dropbox/dev/ggmap/ggmap/revdep/library.noindex/momentuHMM/Rcpp/include" -I"/Users/david_kahle/Dropbox/dev/ggmap/ggmap/revdep/library.noindex/momentuHMM/RcppArmadillo/include" -I/usr/local/include -fPIC -Wall -g -O2 -c XBloop.cpp -o XBloop.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/david_kahle/Dropbox/dev/ggmap/ggmap/revdep/library.noindex/momentuHMM/Rcpp/include" -I"/Users/david_kahle/Dropbox/dev/ggmap/ggmap/revdep/library.noindex/momentuHMM/RcppArmadillo/include" -I/usr/local/include -fPIC -Wall -g -O2 -c getDM.cpp -o getDM.o +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/david_kahle/Dropbox/dev/ggmap/ggmap/revdep/library.noindex/momentuHMM/Rcpp/include" -I"/Users/david_kahle/Dropbox/dev/ggmap/ggmap/revdep/library.noindex/momentuHMM/RcppArmadillo/include" -I/usr/local/include -fPIC -Wall -g -O2 -c momentuHMM_init.c -o momentuHMM_init.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/david_kahle/Dropbox/dev/ggmap/ggmap/revdep/library.noindex/momentuHMM/Rcpp/include" -I"/Users/david_kahle/Dropbox/dev/ggmap/ggmap/revdep/library.noindex/momentuHMM/RcppArmadillo/include" -I/usr/local/include -fPIC -Wall -g -O2 -c nLogLike.cpp -o nLogLike.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/david_kahle/Dropbox/dev/ggmap/ggmap/revdep/library.noindex/momentuHMM/Rcpp/include" -I"/Users/david_kahle/Dropbox/dev/ggmap/ggmap/revdep/library.noindex/momentuHMM/RcppArmadillo/include" -I/usr/local/include -fPIC -Wall -g -O2 -c trMatrix.cpp -o trMatrix.o +clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o momentuHMM.so RcppExports.o XBloop.o getDM.o momentuHMM_init.o nLogLike.o trMatrix.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation +ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0' +ld: warning: directory not found for option '-L/usr/local/gfortran/lib' +ld: library not found for -lgfortran +clang: error: linker command failed with exit code 1 (use -v to see invocation) +make: *** [momentuHMM.so] Error 1 +ERROR: compilation failed for package ‘momentuHMM’ +* removing ‘/Users/david_kahle/Dropbox/dev/ggmap/ggmap/revdep/checks.noindex/momentuHMM/new/momentuHMM.Rcheck/momentuHMM’ + +``` +### CRAN + +``` +* installing *source* package ‘momentuHMM’ ... +** package ‘momentuHMM’ successfully unpacked and MD5 sums checked +** libs +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/david_kahle/Dropbox/dev/ggmap/ggmap/revdep/library.noindex/momentuHMM/Rcpp/include" -I"/Users/david_kahle/Dropbox/dev/ggmap/ggmap/revdep/library.noindex/momentuHMM/RcppArmadillo/include" -I/usr/local/include -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/david_kahle/Dropbox/dev/ggmap/ggmap/revdep/library.noindex/momentuHMM/Rcpp/include" -I"/Users/david_kahle/Dropbox/dev/ggmap/ggmap/revdep/library.noindex/momentuHMM/RcppArmadillo/include" -I/usr/local/include -fPIC -Wall -g -O2 -c XBloop.cpp -o XBloop.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/david_kahle/Dropbox/dev/ggmap/ggmap/revdep/library.noindex/momentuHMM/Rcpp/include" -I"/Users/david_kahle/Dropbox/dev/ggmap/ggmap/revdep/library.noindex/momentuHMM/RcppArmadillo/include" -I/usr/local/include -fPIC -Wall -g -O2 -c getDM.cpp -o getDM.o +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/david_kahle/Dropbox/dev/ggmap/ggmap/revdep/library.noindex/momentuHMM/Rcpp/include" -I"/Users/david_kahle/Dropbox/dev/ggmap/ggmap/revdep/library.noindex/momentuHMM/RcppArmadillo/include" -I/usr/local/include -fPIC -Wall -g -O2 -c momentuHMM_init.c -o momentuHMM_init.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/david_kahle/Dropbox/dev/ggmap/ggmap/revdep/library.noindex/momentuHMM/Rcpp/include" -I"/Users/david_kahle/Dropbox/dev/ggmap/ggmap/revdep/library.noindex/momentuHMM/RcppArmadillo/include" -I/usr/local/include -fPIC -Wall -g -O2 -c nLogLike.cpp -o nLogLike.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/david_kahle/Dropbox/dev/ggmap/ggmap/revdep/library.noindex/momentuHMM/Rcpp/include" -I"/Users/david_kahle/Dropbox/dev/ggmap/ggmap/revdep/library.noindex/momentuHMM/RcppArmadillo/include" -I/usr/local/include -fPIC -Wall -g -O2 -c trMatrix.cpp -o trMatrix.o +clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o momentuHMM.so RcppExports.o XBloop.o getDM.o momentuHMM_init.o nLogLike.o trMatrix.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation +ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0' +ld: warning: directory not found for option '-L/usr/local/gfortran/lib' +ld: library not found for -lgfortran +clang: error: linker command failed with exit code 1 (use -v to see invocation) +make: *** [momentuHMM.so] Error 1 +ERROR: compilation failed for package ‘momentuHMM’ +* removing ‘/Users/david_kahle/Dropbox/dev/ggmap/ggmap/revdep/checks.noindex/momentuHMM/old/momentuHMM.Rcheck/momentuHMM’ + +``` +# moveHMM + +Version: 1.6 + +## In both + +* checking whether package ‘moveHMM’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/david_kahle/Dropbox/dev/ggmap/ggmap/revdep/checks.noindex/moveHMM/new/moveHMM.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘moveHMM’ ... +** package ‘moveHMM’ successfully unpacked and MD5 sums checked +** libs +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/david_kahle/Dropbox/dev/ggmap/ggmap/revdep/library.noindex/moveHMM/Rcpp/include" -I"/Users/david_kahle/Dropbox/dev/ggmap/ggmap/revdep/library.noindex/moveHMM/RcppArmadillo/include" -I/usr/local/include -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/david_kahle/Dropbox/dev/ggmap/ggmap/revdep/library.noindex/moveHMM/Rcpp/include" -I"/Users/david_kahle/Dropbox/dev/ggmap/ggmap/revdep/library.noindex/moveHMM/RcppArmadillo/include" -I/usr/local/include -fPIC -Wall -g -O2 -c moveHMM_init.c -o moveHMM_init.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/david_kahle/Dropbox/dev/ggmap/ggmap/revdep/library.noindex/moveHMM/Rcpp/include" -I"/Users/david_kahle/Dropbox/dev/ggmap/ggmap/revdep/library.noindex/moveHMM/RcppArmadillo/include" -I/usr/local/include -fPIC -Wall -g -O2 -c nLogLike.cpp -o nLogLike.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/david_kahle/Dropbox/dev/ggmap/ggmap/revdep/library.noindex/moveHMM/Rcpp/include" -I"/Users/david_kahle/Dropbox/dev/ggmap/ggmap/revdep/library.noindex/moveHMM/RcppArmadillo/include" -I/usr/local/include -fPIC -Wall -g -O2 -c trMatrix.cpp -o trMatrix.o +clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o moveHMM.so RcppExports.o moveHMM_init.o nLogLike.o trMatrix.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation +ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0' +ld: warning: directory not found for option '-L/usr/local/gfortran/lib' +ld: library not found for -lgfortran +clang: error: linker command failed with exit code 1 (use -v to see invocation) +make: *** [moveHMM.so] Error 1 +ERROR: compilation failed for package ‘moveHMM’ +* removing ‘/Users/david_kahle/Dropbox/dev/ggmap/ggmap/revdep/checks.noindex/moveHMM/new/moveHMM.Rcheck/moveHMM’ + +``` +### CRAN + +``` +* installing *source* package ‘moveHMM’ ... +** package ‘moveHMM’ successfully unpacked and MD5 sums checked +** libs +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/david_kahle/Dropbox/dev/ggmap/ggmap/revdep/library.noindex/moveHMM/Rcpp/include" -I"/Users/david_kahle/Dropbox/dev/ggmap/ggmap/revdep/library.noindex/moveHMM/RcppArmadillo/include" -I/usr/local/include -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/david_kahle/Dropbox/dev/ggmap/ggmap/revdep/library.noindex/moveHMM/Rcpp/include" -I"/Users/david_kahle/Dropbox/dev/ggmap/ggmap/revdep/library.noindex/moveHMM/RcppArmadillo/include" -I/usr/local/include -fPIC -Wall -g -O2 -c moveHMM_init.c -o moveHMM_init.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/david_kahle/Dropbox/dev/ggmap/ggmap/revdep/library.noindex/moveHMM/Rcpp/include" -I"/Users/david_kahle/Dropbox/dev/ggmap/ggmap/revdep/library.noindex/moveHMM/RcppArmadillo/include" -I/usr/local/include -fPIC -Wall -g -O2 -c nLogLike.cpp -o nLogLike.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/david_kahle/Dropbox/dev/ggmap/ggmap/revdep/library.noindex/moveHMM/Rcpp/include" -I"/Users/david_kahle/Dropbox/dev/ggmap/ggmap/revdep/library.noindex/moveHMM/RcppArmadillo/include" -I/usr/local/include -fPIC -Wall -g -O2 -c trMatrix.cpp -o trMatrix.o +clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o moveHMM.so RcppExports.o moveHMM_init.o nLogLike.o trMatrix.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation +ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0' +ld: warning: directory not found for option '-L/usr/local/gfortran/lib' +ld: library not found for -lgfortran +clang: error: linker command failed with exit code 1 (use -v to see invocation) +make: *** [moveHMM.so] Error 1 +ERROR: compilation failed for package ‘moveHMM’ +* removing ‘/Users/david_kahle/Dropbox/dev/ggmap/ggmap/revdep/checks.noindex/moveHMM/old/moveHMM.Rcheck/moveHMM’ + +``` +# rsinaica + +Version: 0.6.0 + +## In both + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 467 marked UTF-8 strings + ``` + +# spew + +Version: 1.3.0 + +## In both + +* checking re-building of vignette outputs ... WARNING + ``` + Error in re-building vignettes: + ... + Loading required package: sp + Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y, : + no font could be found for family "10" + Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y, : + no font could be found for family "10" + Quitting from lines 45-64 (spew-quickstart.Rmd) + Error: processing vignette 'spew-quickstart.Rmd' failed with diagnostics: + polygon edge not found + Execution halted + ``` + +* checking package dependencies ... NOTE + ``` + Package suggested but not available for checking: ‘Rmpi’ + ``` + +* checking dependencies in R code ... NOTE + ``` + Namespace in Imports field not imported from: ‘maptools’ + All declared Imports should be used. + ``` + +# totalcensus + +Version: 0.5.1 + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 5.7Mb + sub-directories of 1Mb or more: + data 5.3Mb + ``` + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 64 marked Latin-1 strings + Note: found 548 marked UTF-8 strings + ``` + +# trackeR + +Version: 1.2.0 + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 13.7Mb + sub-directories of 1Mb or more: + data 2.1Mb + doc 2.5Mb + extdata 8.4Mb + ``` + +# ubeR + +Version: 0.1.4 + +## Newly broken + +* checking tests ... + ``` + ERROR + Running the tests in ‘tests/testthat.R’ failed. + Last 13 lines of output: + > library(testthat) + > library(ubeR) + > + > test_check("ubeR") + ── 1. Failure: raise error on fail to geocode (@test_utils.R#4)  ──────────────── + `geocode("Kryptonopolis")` threw an error with unexpected message. + Expected match: "Unable to find location 'Kryptonopolis'." + Actual message: "Google now requires an API key.\n See ?register_google for details." + + ══ testthat results ════════════════════════════════════════════════════════════ + OK: 8 SKIPPED: 0 FAILED: 1 + 1. Failure: raise error on fail to geocode (@test_utils.R#4) + + Error: testthat unit tests failed + Execution halted + ``` + +# vmsbase + +Version: 2.2.0 + +## In both + +* checking package dependencies ... ERROR + ``` + Packages required but not available: ‘cairoDevice’ ‘gWidgetsRGtk2’ + + See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ + manual. + ``` + +# wdpar + +Version: 0.0.1 + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespaces in Imports field not imported from: + ‘methods’ ‘rappdirs’ ‘sp’ ‘stringi’ + All declared Imports should be used. + ``` + +# weathercan + +Version: 0.2.8 + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespace in Imports field not imported from: ‘xml2’ + All declared Imports should be used. + ``` + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 25 marked UTF-8 strings + ``` +