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Update Readme.md - add read group requirement information in readme #76
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slzarate
reviewed
Aug 29, 2019
| @@ -46,6 +46,8 @@ This app will output a number of files, representing the outputs of each of the | |||
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| ## Additional Notes | |||
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| In order to take advantage of the structural variant tools used in the Parliament2 app, proper read group information is needed in the input mapping (BAM) file. Detailed format specification for Illumina BAM file can be found in <https://support.illumina.com/help/BS_App_ENR_OLH_15050961/Content/Source/Informatics/BAM-Format.htm>. | |||
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Could you also add this to the main README? Maybe reword as
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| In order to take advantage of the structural variant tools used in the Parliament2 app, proper read group information is needed in the input mapping (BAM) file. Detailed format specification for Illumina BAM file can be found in <https://support.illumina.com/help/BS_App_ENR_OLH_15050961/Content/Source/Informatics/BAM-Format.htm>. | |
| In order to take advantage of the structural variant tools used in Parliament2, proper read group information is needed in the input mapping file (of BAM/CRAM type). Detailed format specification for Illumina BAM file can be found in <https://support.illumina.com/help/BS_App_ENR_OLH_15050961/Content/Source/Informatics/BAM-Format.htm>. |
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