requirements.txt

anndata>=0.6.22rc1
# matplotlib 3.1 causes an error in 3d scatter plots. Once solved the dependency can be updated (https://github.com/matplotlib/matplotlib/issues/14298)
matplotlib==3.0.*
pandas>=0.21
scipy>=1.3
seaborn
h5py!=2.10.0
tables
tqdm
importlib_metadata>=0.7; python_version < '3.8'
scikit-learn>=0.21.2
statsmodels>=0.10.0rc2
patsy
networkx
natsort
joblib
numba>=0.41.0
umap-learn>=0.3.0
legacy-api-wrap
setuptools_scm