added blank output file if no CARD hits

dsarov · Oct 8, 2019 · 4fcb26b · 4fcb26b
1 parent aeac446
commit 4fcb26b
Showing 1 changed file with 3 additions and 1 deletion.
diff --git a/bin/SQL_queries_CARD.sh b/bin/SQL_queries_CARD.sh
@@ -50,6 +50,8 @@ while read line; do
   fi
 done < "$seq"_98p.genes
 
+touch ${seq}.CARD_primary_output.txt
+
 if [ -s CARD_no_ignore.txt ]; then
 CARD_PRIMARY () {
 COUNTER=1
@@ -80,4 +82,4 @@ for f in CARD_Primary_*; do sqlite3 "$CARD_DB" < $f >> ${seq}.CARD_primary_outpu
 
 fi
 
-exit 0
+exit 0